Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-77]:
1oiha_PU0_1-77
CI=2.70


[78-254 ]:
1oiha_PU0_78-254
CI=5.30


Level 1
PU
Molecule needs Java 1.4 Structure


[1-51]:
1oiha_PU1_1-51
CI=2.48


[52-77]:
1oiha_PU1_52-77
CI=1.74


[78-254 ]:
1oiha_PU1_78-254
CI=5.30


Level 2
PU
Molecule needs Java 1.4 Structure


[1-51]:
1oiha_PU2_1-51
CI=2.48


[52-77]:
1oiha_PU2_52-77
CI=1.74


[78-171]:
1oiha_PU2_78-171
CI=2.87


[172-187]:
1oiha_PU2_172-187
CI=0.57


[188-254 ]:
1oiha_PU2_188-254
CI=0.37


Level 3
PU
Molecule needs Java 1.4 Structure


[1-51]:
1oiha_PU3_1-51
CI=2.48


[52-77]:
1oiha_PU3_52-77
CI=1.74


[78-171]:
1oiha_PU3_78-171
CI=2.87


[172-187]:
1oiha_PU3_172-187
CI=0.57


[188-238]:
1oiha_PU3_188-238
CI=0.21


[239-254 ]:
1oiha_PU3_239-254
CI=0.81


Level 4
PU
Molecule needs Java 1.4 Structure


[1-51]:
1oiha_PU4_1-51
CI=2.48


[52-77]:
1oiha_PU4_52-77
CI=1.74


[78-171]:
1oiha_PU4_78-171
CI=2.87


[172-187]:
1oiha_PU4_172-187
CI=0.57


[188-209]:
1oiha_PU4_188-209
CI=0.24


[210-238]:
1oiha_PU4_210-238
CI=0.19


[239-254 ]:
1oiha_PU4_239-254
CI=0.81


Level 5
PU
Molecule needs Java 1.4 Structure


[1-51]:
1oiha_PU5_1-51
CI=2.48


[52-77]:
1oiha_PU5_52-77
CI=1.74


[78-98]:
1oiha_PU5_78-98
CI=0.52


[99-114]:
1oiha_PU5_99-114
CI=0.00


[115-171]:
1oiha_PU5_115-171
CI=2.87


[172-187]:
1oiha_PU5_172-187
CI=0.57


[188-209]:
1oiha_PU5_188-209
CI=0.24


[210-238]:
1oiha_PU5_210-238
CI=0.19


[239-254 ]:
1oiha_PU5_239-254
CI=0.81


Level 6
PU
Molecule needs Java 1.4 Structure


[1-51]:
1oiha_PU6_1-51
CI=2.48


[52-77]:
1oiha_PU6_52-77
CI=1.74


[78-98]:
1oiha_PU6_78-98
CI=0.52


[99-114]:
1oiha_PU6_99-114
CI=0.00


[115-137]:
1oiha_PU6_115-137
CI=0.32


[138-171]:
1oiha_PU6_138-171
CI=2.86


[172-187]:
1oiha_PU6_172-187
CI=0.57


[188-209]:
1oiha_PU6_188-209
CI=0.24


[210-238]:
1oiha_PU6_210-238
CI=0.19


[239-254 ]:
1oiha_PU6_239-254
CI=0.81


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1oiha_PU7_1-18
CI=1.87


[19-51]:
1oiha_PU7_19-51
CI=0.62


[52-77]:
1oiha_PU7_52-77
CI=1.74


[78-98]:
1oiha_PU7_78-98
CI=0.52


[99-114]:
1oiha_PU7_99-114
CI=0.00


[115-137]:
1oiha_PU7_115-137
CI=0.32


[138-171]:
1oiha_PU7_138-171
CI=2.86


[172-187]:
1oiha_PU7_172-187
CI=0.57


[188-209]:
1oiha_PU7_188-209
CI=0.24


[210-238]:
1oiha_PU7_210-238
CI=0.19


[239-254 ]:
1oiha_PU7_239-254
CI=0.81


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1oiha_PU8_1-18
CI=1.87


[19-35]:
1oiha_PU8_19-35
CI=0.00


[36-51]:
1oiha_PU8_36-51
CI=0.23


[52-77]:
1oiha_PU8_52-77
CI=1.74


[78-98]:
1oiha_PU8_78-98
CI=0.52


[99-114]:
1oiha_PU8_99-114
CI=0.00


[115-137]:
1oiha_PU8_115-137
CI=0.32


[138-171]:
1oiha_PU8_138-171
CI=2.86


[172-187]:
1oiha_PU8_172-187
CI=0.57


[188-209]:
1oiha_PU8_188-209
CI=0.24


[210-238]:
1oiha_PU8_210-238
CI=0.19


[239-254 ]:
1oiha_PU8_239-254
CI=0.81


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-18]:
1oiha_PU_1-18
CI=1.87


[19-35]:
1oiha_PU_19-35
CI=0.00


[36-51]:
1oiha_PU_36-51
CI=0.23


[52-77]:
1oiha_PU_52-77
CI=1.74


[78-98]:
1oiha_PU_78-98
CI=0.52


[99-114]:
1oiha_PU_99-114
CI=0.00


[115-137]:
1oiha_PU_115-137
CI=0.32


[138-154]:
1oiha_PU_138-154
CI=1.87


[155-171]:
1oiha_PU_155-171
CI=0.54


[172-187]:
1oiha_PU_172-187
CI=0.57


[188-209]:
1oiha_PU_188-209
CI=0.24


[210-238]:
1oiha_PU_210-238
CI=0.19


[239-254 ]:
1oiha_PU_239-254
CI=0.81