Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1om0a_PU0_1-18
CI=0.10


[19-181]:
1om0a_PU0_19-181
CI=4.11


[182-274 ]:
1om0a_PU0_182-274
CI=3.14


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1om0a_PU1_1-18
CI=0.10


[19-120]:
1om0a_PU1_19-120
CI=3.20


[121-181]:
1om0a_PU1_121-181
CI=3.08


[182-274 ]:
1om0a_PU1_182-274
CI=3.14


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1om0a_PU2_1-18
CI=0.10


[19-85]:
1om0a_PU2_19-85
CI=3.10


[86-120]:
1om0a_PU2_86-120
CI=1.42


[121-181]:
1om0a_PU2_121-181
CI=3.08


[182-274 ]:
1om0a_PU2_182-274
CI=3.14


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1om0a_PU3_1-18
CI=0.10


[19-85]:
1om0a_PU3_19-85
CI=3.10


[86-120]:
1om0a_PU3_86-120
CI=1.42


[121-181]:
1om0a_PU3_121-181
CI=3.08


[182-221]:
1om0a_PU3_182-221
CI=2.06


[222-274 ]:
1om0a_PU3_222-274
CI=1.80


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1om0a_PU4_1-18
CI=0.10


[19-85]:
1om0a_PU4_19-85
CI=3.10


[86-120]:
1om0a_PU4_86-120
CI=1.42


[121-137]:
1om0a_PU4_121-137
CI=0.10


[138-155]:
1om0a_PU4_138-155
CI=0.73


[156-181]:
1om0a_PU4_156-181
CI=0.58


[182-221]:
1om0a_PU4_182-221
CI=2.06


[222-274 ]:
1om0a_PU4_222-274
CI=1.80


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1om0a_PU5_1-18
CI=0.10


[19-36]:
1om0a_PU5_19-36
CI=0.50


[37-57]:
1om0a_PU5_37-57
CI=1.35


[58-85]:
1om0a_PU5_58-85
CI=0.53


[86-120]:
1om0a_PU5_86-120
CI=1.42


[121-137]:
1om0a_PU5_121-137
CI=0.10


[138-155]:
1om0a_PU5_138-155
CI=0.73


[156-181]:
1om0a_PU5_156-181
CI=0.58


[182-221]:
1om0a_PU5_182-221
CI=2.06


[222-274 ]:
1om0a_PU5_222-274
CI=1.80


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1om0a_PU6_1-18
CI=0.10


[19-36]:
1om0a_PU6_19-36
CI=0.50


[37-57]:
1om0a_PU6_37-57
CI=1.35


[58-85]:
1om0a_PU6_58-85
CI=0.53


[86-102]:
1om0a_PU6_86-102
CI=0.11


[103-120]:
1om0a_PU6_103-120
CI=1.24


[121-137]:
1om0a_PU6_121-137
CI=0.10


[138-155]:
1om0a_PU6_138-155
CI=0.73


[156-181]:
1om0a_PU6_156-181
CI=0.58


[182-221]:
1om0a_PU6_182-221
CI=2.06


[222-274 ]:
1om0a_PU6_222-274
CI=1.80


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1om0a_PU7_1-18
CI=0.10


[19-36]:
1om0a_PU7_19-36
CI=0.50


[37-57]:
1om0a_PU7_37-57
CI=1.35


[58-85]:
1om0a_PU7_58-85
CI=0.53


[86-102]:
1om0a_PU7_86-102
CI=0.11


[103-120]:
1om0a_PU7_103-120
CI=1.24


[121-137]:
1om0a_PU7_121-137
CI=0.10


[138-155]:
1om0a_PU7_138-155
CI=0.73


[156-181]:
1om0a_PU7_156-181
CI=0.58


[182-221]:
1om0a_PU7_182-221
CI=2.06


[222-248]:
1om0a_PU7_222-248
CI=0.55


[249-274 ]:
1om0a_PU7_249-274
CI=0.43


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1om0a_PU_1-18
CI=0.10


[19-36]:
1om0a_PU_19-36
CI=0.50


[37-57]:
1om0a_PU_37-57
CI=1.35


[58-85]:
1om0a_PU_58-85
CI=0.53


[86-102]:
1om0a_PU_86-102
CI=0.11


[103-120]:
1om0a_PU_103-120
CI=1.24


[121-137]:
1om0a_PU_121-137
CI=0.10


[138-155]:
1om0a_PU_138-155
CI=0.73


[156-181]:
1om0a_PU_156-181
CI=0.58


[182-201]:
1om0a_PU_182-201
CI=1.03


[202-221]:
1om0a_PU_202-221
CI=0.27


[222-248]:
1om0a_PU_222-248
CI=0.55


[249-274 ]:
1om0a_PU_249-274
CI=0.43