Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-221]:
1omha_PU0_1-221
CI=3.85


[222-251]:
1omha_PU0_222-251
CI=0.69


[252-278 ]:
1omha_PU0_252-278
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-185]:
1omha_PU1_1-185
CI=4.01


[186-221]:
1omha_PU1_186-221
CI=1.15


[222-251]:
1omha_PU1_222-251
CI=0.69


[252-278 ]:
1omha_PU1_252-278
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-185]:
1omha_PU2_1-185
CI=4.01


[186-205]:
1omha_PU2_186-205
CI=0.92


[206-221]:
1omha_PU2_206-221
CI=0.11


[222-251]:
1omha_PU2_222-251
CI=0.69


[252-278 ]:
1omha_PU2_252-278
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-78]:
1omha_PU3_1-78
CI=1.93


[79-95]:
1omha_PU3_79-95
CI=0.95


[96-185]:
1omha_PU3_96-185
CI=3.35


[186-205]:
1omha_PU3_186-205
CI=0.92


[206-221]:
1omha_PU3_206-221
CI=0.11


[222-251]:
1omha_PU3_222-251
CI=0.69


[252-278 ]:
1omha_PU3_252-278
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1omha_PU4_1-17
CI=0.00


[18-38]:
1omha_PU4_18-38
CI=1.61


[39-78]:
1omha_PU4_39-78
CI=0.62


[79-95]:
1omha_PU4_79-95
CI=0.95


[96-185]:
1omha_PU4_96-185
CI=3.35


[186-205]:
1omha_PU4_186-205
CI=0.92


[206-221]:
1omha_PU4_206-221
CI=0.11


[222-251]:
1omha_PU4_222-251
CI=0.69


[252-278 ]:
1omha_PU4_252-278
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1omha_PU5_1-17
CI=0.00


[18-38]:
1omha_PU5_18-38
CI=1.61


[39-78]:
1omha_PU5_39-78
CI=0.62


[79-95]:
1omha_PU5_79-95
CI=0.95


[96-132]:
1omha_PU5_96-132
CI=1.71


[133-149]:
1omha_PU5_133-149
CI=2.42


[150-185]:
1omha_PU5_150-185
CI=0.68


[186-205]:
1omha_PU5_186-205
CI=0.92


[206-221]:
1omha_PU5_206-221
CI=0.11


[222-251]:
1omha_PU5_222-251
CI=0.69


[252-278 ]:
1omha_PU5_252-278
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1omha_PU6_1-17
CI=0.00


[18-38]:
1omha_PU6_18-38
CI=1.61


[39-78]:
1omha_PU6_39-78
CI=0.62


[79-95]:
1omha_PU6_79-95
CI=0.95


[96-132]:
1omha_PU6_96-132
CI=1.71


[133-149]:
1omha_PU6_133-149
CI=2.42


[150-166]:
1omha_PU6_150-166
CI=1.30


[167-185]:
1omha_PU6_167-185
CI=0.09


[186-205]:
1omha_PU6_186-205
CI=0.92


[206-221]:
1omha_PU6_206-221
CI=0.11


[222-251]:
1omha_PU6_222-251
CI=0.69


[252-278 ]:
1omha_PU6_252-278
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1omha_PU7_1-17
CI=0.00


[18-38]:
1omha_PU7_18-38
CI=1.61


[39-56]:
1omha_PU7_39-56
CI=0.52


[57-78]:
1omha_PU7_57-78
CI=0.17


[79-95]:
1omha_PU7_79-95
CI=0.95


[96-132]:
1omha_PU7_96-132
CI=1.71


[133-149]:
1omha_PU7_133-149
CI=2.42


[150-166]:
1omha_PU7_150-166
CI=1.30


[167-185]:
1omha_PU7_167-185
CI=0.09


[186-205]:
1omha_PU7_186-205
CI=0.92


[206-221]:
1omha_PU7_206-221
CI=0.11


[222-251]:
1omha_PU7_222-251
CI=0.69


[252-278 ]:
1omha_PU7_252-278
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1omha_PU_1-17
CI=0.00


[18-38]:
1omha_PU_18-38
CI=1.61


[39-56]:
1omha_PU_39-56
CI=0.52


[57-78]:
1omha_PU_57-78
CI=0.17


[79-95]:
1omha_PU_79-95
CI=0.95


[96-112]:
1omha_PU_96-112
CI=0.00


[113-132]:
1omha_PU_113-132
CI=1.31


[133-149]:
1omha_PU_133-149
CI=2.42


[150-166]:
1omha_PU_150-166
CI=1.30


[167-185]:
1omha_PU_167-185
CI=0.09


[186-205]:
1omha_PU_186-205
CI=0.92


[206-221]:
1omha_PU_206-221
CI=0.11


[222-251]:
1omha_PU_222-251
CI=0.69


[252-278 ]:
1omha_PU_252-278
CI=0.00