Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-73]:
1on2a_PU0_1-73
CI=2.43


[74-135 ]:
1on2a_PU0_74-135
CI=1.07


Level 1
PU
Molecule needs Java 1.4 Structure


[1-73]:
1on2a_PU1_1-73
CI=2.43


[74-117]:
1on2a_PU1_74-117
CI=1.29


[118-135 ]:
1on2a_PU1_118-135
CI=0.21


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1on2a_PU2_1-22
CI=0.51


[23-41]:
1on2a_PU2_23-41
CI=0.79


[42-73]:
1on2a_PU2_42-73
CI=1.89


[74-117]:
1on2a_PU2_74-117
CI=1.29


[118-135 ]:
1on2a_PU2_118-135
CI=0.21


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-22]:
1on2a_PU_1-22
CI=0.51


[23-41]:
1on2a_PU_23-41
CI=0.79


[42-73]:
1on2a_PU_42-73
CI=1.89


[74-101]:
1on2a_PU_74-101
CI=1.21


[102-117]:
1on2a_PU_102-117
CI=0.00


[118-135 ]:
1on2a_PU_118-135
CI=0.21