Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-38]:
1onc0_PU0_1-38
CI=1.41


[39-103 ]:
1onc0_PU0_39-103
CI=4.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-38]:
1onc0_PU1_1-38
CI=1.41


[39-60]:
1onc0_PU1_39-60
CI=0.25


[61-83]:
1onc0_PU1_61-83
CI=2.88


[84-103 ]:
1onc0_PU1_84-103
CI=3.01


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1onc0_PU_1-20
CI=0.00


[21-38]:
1onc0_PU_21-38
CI=0.71


[39-60]:
1onc0_PU_39-60
CI=0.25


[61-83]:
1onc0_PU_61-83
CI=2.88


[84-103 ]:
1onc0_PU_84-103
CI=3.01