Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-95]:
1onra_PU0_1-95
CI=2.81


[96-299]:
1onra_PU0_96-299
CI=3.53


[300-316 ]:
1onra_PU0_300-316
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-51]:
1onra_PU1_1-51
CI=1.65


[52-75]:
1onra_PU1_52-75
CI=1.63


[76-95]:
1onra_PU1_76-95
CI=0.64


[96-299]:
1onra_PU1_96-299
CI=3.53


[300-316 ]:
1onra_PU1_300-316
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-51]:
1onra_PU2_1-51
CI=1.65


[52-75]:
1onra_PU2_52-75
CI=1.63


[76-95]:
1onra_PU2_76-95
CI=0.64


[96-177]:
1onra_PU2_96-177
CI=3.53


[178-272]:
1onra_PU2_178-272
CI=2.45


[273-299]:
1onra_PU2_273-299
CI=0.21


[300-316 ]:
1onra_PU2_300-316
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-32]:
1onra_PU3_1-32
CI=1.71


[33-51]:
1onra_PU3_33-51
CI=0.29


[52-75]:
1onra_PU3_52-75
CI=1.63


[76-95]:
1onra_PU3_76-95
CI=0.64


[96-177]:
1onra_PU3_96-177
CI=3.53


[178-272]:
1onra_PU3_178-272
CI=2.45


[273-299]:
1onra_PU3_273-299
CI=0.21


[300-316 ]:
1onra_PU3_300-316
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-32]:
1onra_PU4_1-32
CI=1.71


[33-51]:
1onra_PU4_33-51
CI=0.29


[52-75]:
1onra_PU4_52-75
CI=1.63


[76-95]:
1onra_PU4_76-95
CI=0.64


[96-177]:
1onra_PU4_96-177
CI=3.53


[178-204]:
1onra_PU4_178-204
CI=1.32


[205-272]:
1onra_PU4_205-272
CI=2.06


[273-299]:
1onra_PU4_273-299
CI=0.21


[300-316 ]:
1onra_PU4_300-316
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-32]:
1onra_PU5_1-32
CI=1.71


[33-51]:
1onra_PU5_33-51
CI=0.29


[52-75]:
1onra_PU5_52-75
CI=1.63


[76-95]:
1onra_PU5_76-95
CI=0.64


[96-177]:
1onra_PU5_96-177
CI=3.53


[178-204]:
1onra_PU5_178-204
CI=1.32


[205-224]:
1onra_PU5_205-224
CI=0.45


[225-262]:
1onra_PU5_225-262
CI=1.23


[263-272]:
1onra_PU5_263-272
CI=0.00


[273-299]:
1onra_PU5_273-299
CI=0.21


[300-316 ]:
1onra_PU5_300-316
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-32]:
1onra_PU6_1-32
CI=1.71


[33-51]:
1onra_PU6_33-51
CI=0.29


[52-75]:
1onra_PU6_52-75
CI=1.63


[76-95]:
1onra_PU6_76-95
CI=0.64


[96-123]:
1onra_PU6_96-123
CI=0.48


[124-177]:
1onra_PU6_124-177
CI=3.65


[178-204]:
1onra_PU6_178-204
CI=1.32


[205-224]:
1onra_PU6_205-224
CI=0.45


[225-262]:
1onra_PU6_225-262
CI=1.23


[263-272]:
1onra_PU6_263-272
CI=0.00


[273-299]:
1onra_PU6_273-299
CI=0.21


[300-316 ]:
1onra_PU6_300-316
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-32]:
1onra_PU7_1-32
CI=1.71


[33-51]:
1onra_PU7_33-51
CI=0.29


[52-75]:
1onra_PU7_52-75
CI=1.63


[76-95]:
1onra_PU7_76-95
CI=0.64


[96-123]:
1onra_PU7_96-123
CI=0.48


[124-177]:
1onra_PU7_124-177
CI=3.65


[178-204]:
1onra_PU7_178-204
CI=1.32


[205-224]:
1onra_PU7_205-224
CI=0.45


[225-243]:
1onra_PU7_225-243
CI=0.47


[244-262]:
1onra_PU7_244-262
CI=0.00


[263-272]:
1onra_PU7_263-272
CI=0.00


[273-299]:
1onra_PU7_273-299
CI=0.21


[300-316 ]:
1onra_PU7_300-316
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-32]:
1onra_PU_1-32
CI=1.71


[33-51]:
1onra_PU_33-51
CI=0.29


[52-75]:
1onra_PU_52-75
CI=1.63


[76-95]:
1onra_PU_76-95
CI=0.64


[96-123]:
1onra_PU_96-123
CI=0.48


[124-156]:
1onra_PU_124-156
CI=2.53


[157-177]:
1onra_PU_157-177
CI=0.98


[178-204]:
1onra_PU_178-204
CI=1.32


[205-224]:
1onra_PU_205-224
CI=0.45


[225-243]:
1onra_PU_225-243
CI=0.47


[244-262]:
1onra_PU_244-262
CI=0.00


[263-272]:
1onra_PU_263-272
CI=0.00


[273-299]:
1onra_PU_273-299
CI=0.21


[300-316 ]:
1onra_PU_300-316
CI=0.00