Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ooha_PU0_1-16
CI=0.00


[17-49]:
1ooha_PU0_17-49
CI=0.90


[50-126 ]:
1ooha_PU0_50-126
CI=2.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ooha_PU1_1-16
CI=0.00


[17-49]:
1ooha_PU1_17-49
CI=0.90


[50-66]:
1ooha_PU1_50-66
CI=0.77


[67-93]:
1ooha_PU1_67-93
CI=0.69


[94-126 ]:
1ooha_PU1_94-126
CI=1.26


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ooha_PU2_1-16
CI=0.00


[17-49]:
1ooha_PU2_17-49
CI=0.90


[50-66]:
1ooha_PU2_50-66
CI=0.77


[67-93]:
1ooha_PU2_67-93
CI=0.69


[94-110]:
1ooha_PU2_94-110
CI=1.08


[111-126 ]:
1ooha_PU2_111-126
CI=0.45


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1ooha_PU_1-16
CI=0.00


[17-33]:
1ooha_PU_17-33
CI=0.00


[34-49]:
1ooha_PU_34-49
CI=0.00


[50-66]:
1ooha_PU_50-66
CI=0.77


[67-93]:
1ooha_PU_67-93
CI=0.69


[94-110]:
1ooha_PU_94-110
CI=1.08


[111-126 ]:
1ooha_PU_111-126
CI=0.45