Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1opd0_PU0_1-16
CI=0.12


[17-54]:
1opd0_PU0_17-54
CI=2.26


[55-85 ]:
1opd0_PU0_55-85
CI=0.49


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1opd0_PU_1-16
CI=0.12


[17-36]:
1opd0_PU_17-36
CI=0.09


[37-54]:
1opd0_PU_37-54
CI=1.03


[55-85 ]:
1opd0_PU_55-85
CI=0.49