Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-36]:
1oqqa_PU0_1-36
CI=2.16


[37-88]:
1oqqa_PU0_37-88
CI=2.83


[89-106 ]:
1oqqa_PU0_89-106
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1oqqa_PU1_1-19
CI=2.27


[20-36]:
1oqqa_PU1_20-36
CI=0.97


[37-88]:
1oqqa_PU1_37-88
CI=2.83


[89-106 ]:
1oqqa_PU1_89-106
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1oqqa_PU_1-19
CI=2.27


[20-36]:
1oqqa_PU_20-36
CI=0.97


[37-60]:
1oqqa_PU_37-60
CI=0.93


[61-88]:
1oqqa_PU_61-88
CI=0.66


[89-106 ]:
1oqqa_PU_89-106
CI=0.00