Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1or0a_PU0_1-27
CI=1.96


[28-152 ]:
1or0a_PU0_28-152
CI=2.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1or0a_PU1_1-27
CI=1.96


[28-136]:
1or0a_PU1_28-136
CI=3.10


[137-152 ]:
1or0a_PU1_137-152
CI=0.33


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1or0a_PU2_1-27
CI=1.96


[28-52]:
1or0a_PU2_28-52
CI=0.22


[53-79]:
1or0a_PU2_53-79
CI=2.34


[80-136]:
1or0a_PU2_80-136
CI=1.73


[137-152 ]:
1or0a_PU2_137-152
CI=0.33


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1or0a_PU_1-27
CI=1.96


[28-52]:
1or0a_PU_28-52
CI=0.22


[53-79]:
1or0a_PU_53-79
CI=2.34


[80-95]:
1or0a_PU_80-95
CI=0.22


[96-127]:
1or0a_PU_96-127
CI=1.41


[128-136]:
1or0a_PU_128-136
CI=0.00


[137-152 ]:
1or0a_PU_137-152
CI=0.33