Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-80]:
1orra_PU0_1-80
CI=3.54


[81-338 ]:
1orra_PU0_81-338
CI=4.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-80]:
1orra_PU1_1-80
CI=3.54


[81-190]:
1orra_PU1_81-190
CI=2.96


[191-338 ]:
1orra_PU1_191-338
CI=3.73


Level 2
PU
Molecule needs Java 1.4 Structure


[1-80]:
1orra_PU2_1-80
CI=3.54


[81-130]:
1orra_PU2_81-130
CI=0.64


[131-156]:
1orra_PU2_131-156
CI=1.31


[157-190]:
1orra_PU2_157-190
CI=0.77


[191-338 ]:
1orra_PU2_191-338
CI=3.73


Level 3
PU
Molecule needs Java 1.4 Structure


[1-80]:
1orra_PU3_1-80
CI=3.54


[81-104]:
1orra_PU3_81-104
CI=1.15


[105-130]:
1orra_PU3_105-130
CI=0.15


[131-156]:
1orra_PU3_131-156
CI=1.31


[157-190]:
1orra_PU3_157-190
CI=0.77


[191-338 ]:
1orra_PU3_191-338
CI=3.73


Level 4
PU
Molecule needs Java 1.4 Structure


[1-80]:
1orra_PU4_1-80
CI=3.54


[81-104]:
1orra_PU4_81-104
CI=1.15


[105-130]:
1orra_PU4_105-130
CI=0.15


[131-156]:
1orra_PU4_131-156
CI=1.31


[157-173]:
1orra_PU4_157-173
CI=0.42


[174-190]:
1orra_PU4_174-190
CI=0.97


[191-338 ]:
1orra_PU4_191-338
CI=3.73


Level 5
PU
Molecule needs Java 1.4 Structure


[1-80]:
1orra_PU5_1-80
CI=3.54


[81-104]:
1orra_PU5_81-104
CI=1.15


[105-130]:
1orra_PU5_105-130
CI=0.15


[131-156]:
1orra_PU5_131-156
CI=1.31


[157-173]:
1orra_PU5_157-173
CI=0.42


[174-190]:
1orra_PU5_174-190
CI=0.97


[191-244]:
1orra_PU5_191-244
CI=1.69


[245-260]:
1orra_PU5_245-260
CI=0.11


[261-338 ]:
1orra_PU5_261-338
CI=1.46


Level 6
PU
Molecule needs Java 1.4 Structure


[1-80]:
1orra_PU6_1-80
CI=3.54


[81-104]:
1orra_PU6_81-104
CI=1.15


[105-130]:
1orra_PU6_105-130
CI=0.15


[131-156]:
1orra_PU6_131-156
CI=1.31


[157-173]:
1orra_PU6_157-173
CI=0.42


[174-190]:
1orra_PU6_174-190
CI=0.97


[191-244]:
1orra_PU6_191-244
CI=1.69


[245-260]:
1orra_PU6_245-260
CI=0.11


[261-278]:
1orra_PU6_261-278
CI=0.00


[279-302]:
1orra_PU6_279-302
CI=0.69


[303-338 ]:
1orra_PU6_303-338
CI=0.16


Level 7
PU
Molecule needs Java 1.4 Structure


[1-80]:
1orra_PU7_1-80
CI=3.54


[81-104]:
1orra_PU7_81-104
CI=1.15


[105-130]:
1orra_PU7_105-130
CI=0.15


[131-156]:
1orra_PU7_131-156
CI=1.31


[157-173]:
1orra_PU7_157-173
CI=0.42


[174-190]:
1orra_PU7_174-190
CI=0.97


[191-244]:
1orra_PU7_191-244
CI=1.69


[245-260]:
1orra_PU7_245-260
CI=0.11


[261-278]:
1orra_PU7_261-278
CI=0.00


[279-302]:
1orra_PU7_279-302
CI=0.69


[303-319]:
1orra_PU7_303-319
CI=0.32


[320-338 ]:
1orra_PU7_320-338
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-55]:
1orra_PU8_1-55
CI=3.38


[56-80]:
1orra_PU8_56-80
CI=0.45


[81-104]:
1orra_PU8_81-104
CI=1.15


[105-130]:
1orra_PU8_105-130
CI=0.15


[131-156]:
1orra_PU8_131-156
CI=1.31


[157-173]:
1orra_PU8_157-173
CI=0.42


[174-190]:
1orra_PU8_174-190
CI=0.97


[191-244]:
1orra_PU8_191-244
CI=1.69


[245-260]:
1orra_PU8_245-260
CI=0.11


[261-278]:
1orra_PU8_261-278
CI=0.00


[279-302]:
1orra_PU8_279-302
CI=0.69


[303-319]:
1orra_PU8_303-319
CI=0.32


[320-338 ]:
1orra_PU8_320-338
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-55]:
1orra_PU9_1-55
CI=3.38


[56-80]:
1orra_PU9_56-80
CI=0.45


[81-104]:
1orra_PU9_81-104
CI=1.15


[105-130]:
1orra_PU9_105-130
CI=0.15


[131-156]:
1orra_PU9_131-156
CI=1.31


[157-173]:
1orra_PU9_157-173
CI=0.42


[174-190]:
1orra_PU9_174-190
CI=0.97


[191-213]:
1orra_PU9_191-213
CI=1.67


[214-244]:
1orra_PU9_214-244
CI=0.18


[245-260]:
1orra_PU9_245-260
CI=0.11


[261-278]:
1orra_PU9_261-278
CI=0.00


[279-302]:
1orra_PU9_279-302
CI=0.69


[303-319]:
1orra_PU9_303-319
CI=0.32


[320-338 ]:
1orra_PU9_320-338
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-30]:
1orra_PU_1-30
CI=2.78


[31-55]:
1orra_PU_31-55
CI=0.52


[56-80]:
1orra_PU_56-80
CI=0.45


[81-104]:
1orra_PU_81-104
CI=1.15


[105-130]:
1orra_PU_105-130
CI=0.15


[131-156]:
1orra_PU_131-156
CI=1.31


[157-173]:
1orra_PU_157-173
CI=0.42


[174-190]:
1orra_PU_174-190
CI=0.97


[191-213]:
1orra_PU_191-213
CI=1.67


[214-244]:
1orra_PU_214-244
CI=0.18


[245-260]:
1orra_PU_245-260
CI=0.11


[261-278]:
1orra_PU_261-278
CI=0.00


[279-302]:
1orra_PU_279-302
CI=0.69


[303-319]:
1orra_PU_303-319
CI=0.32


[320-338 ]:
1orra_PU_320-338
CI=0.00