Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1osya_PU0_1-17
CI=0.10


[18-114 ]:
1osya_PU0_18-114
CI=4.71


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1osya_PU1_1-17
CI=0.10


[18-86]:
1osya_PU1_18-86
CI=3.90


[87-114 ]:
1osya_PU1_87-114
CI=3.03


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1osya_PU_1-17
CI=0.10


[18-43]:
1osya_PU_18-43
CI=3.07


[44-63]:
1osya_PU_44-63
CI=1.79


[64-86]:
1osya_PU_64-86
CI=1.31


[87-114 ]:
1osya_PU_87-114
CI=3.03