Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ouwa_PU0_1-20
CI=0.00


[21-77]:
1ouwa_PU0_21-77
CI=4.30


[78-148 ]:
1ouwa_PU0_78-148
CI=4.78


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ouwa_PU1_1-20
CI=0.00


[21-77]:
1ouwa_PU1_21-77
CI=4.30


[78-125]:
1ouwa_PU1_78-125
CI=4.57


[126-148 ]:
1ouwa_PU1_126-148
CI=2.97


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ouwa_PU2_1-20
CI=0.00


[21-60]:
1ouwa_PU2_21-60
CI=3.64


[61-77]:
1ouwa_PU2_61-77
CI=0.00


[78-125]:
1ouwa_PU2_78-125
CI=4.57


[126-148 ]:
1ouwa_PU2_126-148
CI=2.97


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ouwa_PU3_1-20
CI=0.00


[21-43]:
1ouwa_PU3_21-43
CI=1.40


[44-60]:
1ouwa_PU3_44-60
CI=1.97


[61-77]:
1ouwa_PU3_61-77
CI=0.00


[78-125]:
1ouwa_PU3_78-125
CI=4.57


[126-148 ]:
1ouwa_PU3_126-148
CI=2.97


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-20]:
1ouwa_PU_1-20
CI=0.00


[21-43]:
1ouwa_PU_21-43
CI=1.40


[44-60]:
1ouwa_PU_44-60
CI=1.97


[61-77]:
1ouwa_PU_61-77
CI=0.00


[78-98]:
1ouwa_PU_78-98
CI=1.35


[99-125]:
1ouwa_PU_99-125
CI=1.41


[126-148 ]:
1ouwa_PU_126-148
CI=2.97