Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-52]:
1ov3a_PU0_1-52
CI=2.89


[53-134 ]:
1ov3a_PU0_53-134
CI=3.55


Level 1
PU
Molecule needs Java 1.4 Structure


[1-52]:
1ov3a_PU1_1-52
CI=2.89


[53-71]:
1ov3a_PU1_53-71
CI=0.00


[72-134 ]:
1ov3a_PU1_72-134
CI=4.42


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1ov3a_PU2_1-31
CI=1.53


[32-52]:
1ov3a_PU2_32-52
CI=2.32


[53-71]:
1ov3a_PU2_53-71
CI=0.00


[72-134 ]:
1ov3a_PU2_72-134
CI=4.42


Level 3
PU
Molecule needs Java 1.4 Structure


[1-31]:
1ov3a_PU3_1-31
CI=1.53


[32-52]:
1ov3a_PU3_32-52
CI=2.32


[53-71]:
1ov3a_PU3_53-71
CI=0.00


[72-107]:
1ov3a_PU3_72-107
CI=2.76


[108-134 ]:
1ov3a_PU3_108-134
CI=1.91


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-31]:
1ov3a_PU_1-31
CI=1.53


[32-52]:
1ov3a_PU_32-52
CI=2.32


[53-71]:
1ov3a_PU_53-71
CI=0.00


[72-88]:
1ov3a_PU_72-88
CI=0.00


[89-107]:
1ov3a_PU_89-107
CI=0.59


[108-134 ]:
1ov3a_PU_108-134
CI=1.91