Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-84]:
1ow1a_PU0_1-84
CI=3.29


[85-110]:
1ow1a_PU0_85-110
CI=0.22


[111-167 ]:
1ow1a_PU0_111-167
CI=2.67


Level 1
PU
Molecule needs Java 1.4 Structure


[1-84]:
1ow1a_PU1_1-84
CI=3.29


[85-110]:
1ow1a_PU1_85-110
CI=0.22


[111-132]:
1ow1a_PU1_111-132
CI=2.72


[133-167 ]:
1ow1a_PU1_133-167
CI=0.86


Level 2
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ow1a_PU2_1-34
CI=2.19


[35-75]:
1ow1a_PU2_35-75
CI=0.64


[76-84]:
1ow1a_PU2_76-84
CI=0.00


[85-110]:
1ow1a_PU2_85-110
CI=0.22


[111-132]:
1ow1a_PU2_111-132
CI=2.72


[133-167 ]:
1ow1a_PU2_133-167
CI=0.86


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-34]:
1ow1a_PU_1-34
CI=2.19


[35-53]:
1ow1a_PU_35-53
CI=0.10


[54-75]:
1ow1a_PU_54-75
CI=0.24


[76-84]:
1ow1a_PU_76-84
CI=0.00


[85-110]:
1ow1a_PU_85-110
CI=0.22


[111-132]:
1ow1a_PU_111-132
CI=2.72


[133-167 ]:
1ow1a_PU_133-167
CI=0.86