Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-54]:
1ow4a_PU0_1-54
CI=2.71


[55-120 ]:
1ow4a_PU0_55-120
CI=1.98


Level 1
PU
Molecule needs Java 1.4 Structure


[1-54]:
1ow4a_PU1_1-54
CI=2.71


[55-70]:
1ow4a_PU1_55-70
CI=1.48


[71-86]:
1ow4a_PU1_71-86
CI=0.45


[87-120 ]:
1ow4a_PU1_87-120
CI=1.49


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ow4a_PU2_1-21
CI=0.00


[22-54]:
1ow4a_PU2_22-54
CI=1.99


[55-70]:
1ow4a_PU2_55-70
CI=1.48


[71-86]:
1ow4a_PU2_71-86
CI=0.45


[87-120 ]:
1ow4a_PU2_87-120
CI=1.49


Level 3
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ow4a_PU3_1-21
CI=0.00


[22-54]:
1ow4a_PU3_22-54
CI=1.99


[55-70]:
1ow4a_PU3_55-70
CI=1.48


[71-86]:
1ow4a_PU3_71-86
CI=0.45


[87-103]:
1ow4a_PU3_87-103
CI=0.00


[104-120 ]:
1ow4a_PU3_104-120
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-21]:
1ow4a_PU_1-21
CI=0.00


[22-38]:
1ow4a_PU_22-38
CI=0.64


[39-54]:
1ow4a_PU_39-54
CI=0.00


[55-70]:
1ow4a_PU_55-70
CI=1.48


[71-86]:
1ow4a_PU_71-86
CI=0.45


[87-103]:
1ow4a_PU_87-103
CI=0.00


[104-120 ]:
1ow4a_PU_104-120
CI=0.00