Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1oxca_PU0_1-16
CI=0.11


[17-53]:
1oxca_PU0_17-53
CI=4.13


[54-114 ]:
1oxca_PU0_54-114
CI=3.20


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1oxca_PU1_1-16
CI=0.11


[17-53]:
1oxca_PU1_17-53
CI=4.13


[54-73]:
1oxca_PU1_54-73
CI=0.28


[74-114 ]:
1oxca_PU1_74-114
CI=3.49


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1oxca_PU2_1-16
CI=0.11


[17-53]:
1oxca_PU2_17-53
CI=4.13


[54-73]:
1oxca_PU2_54-73
CI=0.28


[74-94]:
1oxca_PU2_74-94
CI=2.34


[95-114 ]:
1oxca_PU2_95-114
CI=0.65


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1oxca_PU_1-16
CI=0.11


[17-37]:
1oxca_PU_17-37
CI=0.53


[38-53]:
1oxca_PU_38-53
CI=1.37


[54-73]:
1oxca_PU_54-73
CI=0.28


[74-94]:
1oxca_PU_74-94
CI=2.34


[95-114 ]:
1oxca_PU_95-114
CI=0.65