Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-42]:
1oz9a_PU0_1-42
CI=2.64


[43-60]:
1oz9a_PU0_43-60
CI=2.77


[61-141 ]:
1oz9a_PU0_61-141
CI=2.78


Level 1
PU
Molecule needs Java 1.4 Structure


[1-42]:
1oz9a_PU1_1-42
CI=2.64


[43-60]:
1oz9a_PU1_43-60
CI=2.77


[61-115]:
1oz9a_PU1_61-115
CI=3.31


[116-141 ]:
1oz9a_PU1_116-141
CI=1.01


Level 2
PU
Molecule needs Java 1.4 Structure


[1-42]:
1oz9a_PU2_1-42
CI=2.64


[43-60]:
1oz9a_PU2_43-60
CI=2.77


[61-82]:
1oz9a_PU2_61-82
CI=2.91


[83-115]:
1oz9a_PU2_83-115
CI=0.91


[116-141 ]:
1oz9a_PU2_116-141
CI=1.01


Level 3
PU
Molecule needs Java 1.4 Structure


[1-42]:
1oz9a_PU3_1-42
CI=2.64


[43-60]:
1oz9a_PU3_43-60
CI=2.77


[61-82]:
1oz9a_PU3_61-82
CI=2.91


[83-99]:
1oz9a_PU3_83-99
CI=0.65


[100-115]:
1oz9a_PU3_100-115
CI=0.00


[116-141 ]:
1oz9a_PU3_116-141
CI=1.01


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-21]:
1oz9a_PU_1-21
CI=0.52


[22-42]:
1oz9a_PU_22-42
CI=0.09


[43-60]:
1oz9a_PU_43-60
CI=2.77


[61-82]:
1oz9a_PU_61-82
CI=2.91


[83-99]:
1oz9a_PU_83-99
CI=0.65


[100-115]:
1oz9a_PU_100-115
CI=0.00


[116-141 ]:
1oz9a_PU_116-141
CI=1.01