Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1p0ka_PU0_1-41
CI=0.75


[42-152]:
1p0ka_PU0_42-152
CI=3.53


[153-306 ]:
1p0ka_PU0_153-306
CI=3.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1p0ka_PU1_1-24
CI=0.00


[25-41]:
1p0ka_PU1_25-41
CI=1.75


[42-152]:
1p0ka_PU1_42-152
CI=3.53


[153-306 ]:
1p0ka_PU1_153-306
CI=3.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1p0ka_PU2_1-24
CI=0.00


[25-41]:
1p0ka_PU2_25-41
CI=1.75


[42-152]:
1p0ka_PU2_42-152
CI=3.53


[153-238]:
1p0ka_PU2_153-238
CI=3.90


[239-258]:
1p0ka_PU2_239-258
CI=1.02


[259-306 ]:
1p0ka_PU2_259-306
CI=0.99


Level 3
PU
Molecule needs Java 1.4 Structure


[1-24]:
1p0ka_PU3_1-24
CI=0.00


[25-41]:
1p0ka_PU3_25-41
CI=1.75


[42-152]:
1p0ka_PU3_42-152
CI=3.53


[153-238]:
1p0ka_PU3_153-238
CI=3.90


[239-258]:
1p0ka_PU3_239-258
CI=1.02


[259-281]:
1p0ka_PU3_259-281
CI=0.40


[282-306 ]:
1p0ka_PU3_282-306
CI=1.28


Level 4
PU
Molecule needs Java 1.4 Structure


[1-24]:
1p0ka_PU4_1-24
CI=0.00


[25-41]:
1p0ka_PU4_25-41
CI=1.75


[42-127]:
1p0ka_PU4_42-127
CI=3.90


[128-152]:
1p0ka_PU4_128-152
CI=0.07


[153-238]:
1p0ka_PU4_153-238
CI=3.90


[239-258]:
1p0ka_PU4_239-258
CI=1.02


[259-281]:
1p0ka_PU4_259-281
CI=0.40


[282-306 ]:
1p0ka_PU4_282-306
CI=1.28


Level 5
PU
Molecule needs Java 1.4 Structure


[1-24]:
1p0ka_PU5_1-24
CI=0.00


[25-41]:
1p0ka_PU5_25-41
CI=1.75


[42-127]:
1p0ka_PU5_42-127
CI=3.90


[128-152]:
1p0ka_PU5_128-152
CI=0.07


[153-210]:
1p0ka_PU5_153-210
CI=2.62


[211-238]:
1p0ka_PU5_211-238
CI=3.02


[239-258]:
1p0ka_PU5_239-258
CI=1.02


[259-281]:
1p0ka_PU5_259-281
CI=0.40


[282-306 ]:
1p0ka_PU5_282-306
CI=1.28


Level 6
PU
Molecule needs Java 1.4 Structure


[1-24]:
1p0ka_PU6_1-24
CI=0.00


[25-41]:
1p0ka_PU6_25-41
CI=1.75


[42-97]:
1p0ka_PU6_42-97
CI=2.39


[98-127]:
1p0ka_PU6_98-127
CI=2.59


[128-152]:
1p0ka_PU6_128-152
CI=0.07


[153-210]:
1p0ka_PU6_153-210
CI=2.62


[211-238]:
1p0ka_PU6_211-238
CI=3.02


[239-258]:
1p0ka_PU6_239-258
CI=1.02


[259-281]:
1p0ka_PU6_259-281
CI=0.40


[282-306 ]:
1p0ka_PU6_282-306
CI=1.28


Level 7
PU
Molecule needs Java 1.4 Structure


[1-24]:
1p0ka_PU7_1-24
CI=0.00


[25-41]:
1p0ka_PU7_25-41
CI=1.75


[42-97]:
1p0ka_PU7_42-97
CI=2.39


[98-127]:
1p0ka_PU7_98-127
CI=2.59


[128-152]:
1p0ka_PU7_128-152
CI=0.07


[153-182]:
1p0ka_PU7_153-182
CI=2.71


[183-210]:
1p0ka_PU7_183-210
CI=0.07


[211-238]:
1p0ka_PU7_211-238
CI=3.02


[239-258]:
1p0ka_PU7_239-258
CI=1.02


[259-281]:
1p0ka_PU7_259-281
CI=0.40


[282-306 ]:
1p0ka_PU7_282-306
CI=1.28


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-24]:
1p0ka_PU_1-24
CI=0.00


[25-41]:
1p0ka_PU_25-41
CI=1.75


[42-73]:
1p0ka_PU_42-73
CI=1.12


[74-97]:
1p0ka_PU_74-97
CI=0.77


[98-127]:
1p0ka_PU_98-127
CI=2.59


[128-152]:
1p0ka_PU_128-152
CI=0.07


[153-182]:
1p0ka_PU_153-182
CI=2.71


[183-210]:
1p0ka_PU_183-210
CI=0.07


[211-238]:
1p0ka_PU_211-238
CI=3.02


[239-258]:
1p0ka_PU_239-258
CI=1.02


[259-281]:
1p0ka_PU_259-281
CI=0.40


[282-306 ]:
1p0ka_PU_282-306
CI=1.28