Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-21]:
1p0za_PU0_1-21
CI=0.00


[22-76]:
1p0za_PU0_22-76
CI=2.43


[77-131 ]:
1p0za_PU0_77-131
CI=3.78


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1p0za_PU1_1-21
CI=0.00


[22-40]:
1p0za_PU1_22-40
CI=0.68


[41-76]:
1p0za_PU1_41-76
CI=2.90


[77-131 ]:
1p0za_PU1_77-131
CI=3.78


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1p0za_PU2_1-21
CI=0.00


[22-40]:
1p0za_PU2_22-40
CI=0.68


[41-57]:
1p0za_PU2_41-57
CI=0.54


[58-76]:
1p0za_PU2_58-76
CI=2.45


[77-131 ]:
1p0za_PU2_77-131
CI=3.78


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1p0za_PU_1-21
CI=0.00


[22-40]:
1p0za_PU_22-40
CI=0.68


[41-57]:
1p0za_PU_41-57
CI=0.54


[58-76]:
1p0za_PU_58-76
CI=2.45


[77-107]:
1p0za_PU_77-107
CI=3.12


[108-131 ]:
1p0za_PU_108-131
CI=0.71