Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-120]:
1p42a_PU0_1-120
CI=4.85


[121-267 ]:
1p42a_PU0_121-267
CI=3.80


Level 1
PU
Molecule needs Java 1.4 Structure


[1-120]:
1p42a_PU1_1-120
CI=4.85


[121-177]:
1p42a_PU1_121-177
CI=1.97


[178-216]:
1p42a_PU1_178-216
CI=1.52


[217-267 ]:
1p42a_PU1_217-267
CI=1.11


Level 2
PU
Molecule needs Java 1.4 Structure


[1-120]:
1p42a_PU2_1-120
CI=4.85


[121-144]:
1p42a_PU2_121-144
CI=1.97


[145-177]:
1p42a_PU2_145-177
CI=1.91


[178-216]:
1p42a_PU2_178-216
CI=1.52


[217-267 ]:
1p42a_PU2_217-267
CI=1.11


Level 3
PU
Molecule needs Java 1.4 Structure


[1-40]:
1p42a_PU3_1-40
CI=2.15


[41-70]:
1p42a_PU3_41-70
CI=2.65


[71-120]:
1p42a_PU3_71-120
CI=0.79


[121-144]:
1p42a_PU3_121-144
CI=1.97


[145-177]:
1p42a_PU3_145-177
CI=1.91


[178-216]:
1p42a_PU3_178-216
CI=1.52


[217-267 ]:
1p42a_PU3_217-267
CI=1.11


Level 4
PU
Molecule needs Java 1.4 Structure


[1-40]:
1p42a_PU4_1-40
CI=2.15


[41-70]:
1p42a_PU4_41-70
CI=2.65


[71-120]:
1p42a_PU4_71-120
CI=0.79


[121-144]:
1p42a_PU4_121-144
CI=1.97


[145-177]:
1p42a_PU4_145-177
CI=1.91


[178-216]:
1p42a_PU4_178-216
CI=1.52


[217-233]:
1p42a_PU4_217-233
CI=0.11


[234-267 ]:
1p42a_PU4_234-267
CI=0.83


Level 5
PU
Molecule needs Java 1.4 Structure


[1-40]:
1p42a_PU5_1-40
CI=2.15


[41-70]:
1p42a_PU5_41-70
CI=2.65


[71-120]:
1p42a_PU5_71-120
CI=0.79


[121-144]:
1p42a_PU5_121-144
CI=1.97


[145-177]:
1p42a_PU5_145-177
CI=1.91


[178-197]:
1p42a_PU5_178-197
CI=0.28


[198-216]:
1p42a_PU5_198-216
CI=0.98


[217-233]:
1p42a_PU5_217-233
CI=0.11


[234-267 ]:
1p42a_PU5_234-267
CI=0.83


Level 6
PU
Molecule needs Java 1.4 Structure


[1-40]:
1p42a_PU6_1-40
CI=2.15


[41-70]:
1p42a_PU6_41-70
CI=2.65


[71-96]:
1p42a_PU6_71-96
CI=0.28


[97-120]:
1p42a_PU6_97-120
CI=0.08


[121-144]:
1p42a_PU6_121-144
CI=1.97


[145-177]:
1p42a_PU6_145-177
CI=1.91


[178-197]:
1p42a_PU6_178-197
CI=0.28


[198-216]:
1p42a_PU6_198-216
CI=0.98


[217-233]:
1p42a_PU6_217-233
CI=0.11


[234-267 ]:
1p42a_PU6_234-267
CI=0.83


Level 7
PU
Molecule needs Java 1.4 Structure


[1-40]:
1p42a_PU7_1-40
CI=2.15


[41-70]:
1p42a_PU7_41-70
CI=2.65


[71-96]:
1p42a_PU7_71-96
CI=0.28


[97-120]:
1p42a_PU7_97-120
CI=0.08


[121-144]:
1p42a_PU7_121-144
CI=1.97


[145-177]:
1p42a_PU7_145-177
CI=1.91


[178-197]:
1p42a_PU7_178-197
CI=0.28


[198-216]:
1p42a_PU7_198-216
CI=0.98


[217-233]:
1p42a_PU7_217-233
CI=0.11


[234-250]:
1p42a_PU7_234-250
CI=0.32


[251-267 ]:
1p42a_PU7_251-267
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-20]:
1p42a_PU_1-20
CI=0.00


[21-40]:
1p42a_PU_21-40
CI=0.09


[41-70]:
1p42a_PU_41-70
CI=2.65


[71-96]:
1p42a_PU_71-96
CI=0.28


[97-120]:
1p42a_PU_97-120
CI=0.08


[121-144]:
1p42a_PU_121-144
CI=1.97


[145-177]:
1p42a_PU_145-177
CI=1.91


[178-197]:
1p42a_PU_178-197
CI=0.28


[198-216]:
1p42a_PU_198-216
CI=0.98


[217-233]:
1p42a_PU_217-233
CI=0.11


[234-250]:
1p42a_PU_234-250
CI=0.32


[251-267 ]:
1p42a_PU_251-267
CI=0.00