Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-104]:
1p90a_PU0_1-104
CI=4.56


[105-123 ]:
1p90a_PU0_105-123
CI=0.28


Level 1
PU
Molecule needs Java 1.4 Structure


[1-47]:
1p90a_PU1_1-47
CI=3.61


[48-64]:
1p90a_PU1_48-64
CI=0.65


[65-104]:
1p90a_PU1_65-104
CI=2.28


[105-123 ]:
1p90a_PU1_105-123
CI=0.28


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1p90a_PU2_1-27
CI=1.27


[28-47]:
1p90a_PU2_28-47
CI=2.64


[48-64]:
1p90a_PU2_48-64
CI=0.65


[65-104]:
1p90a_PU2_65-104
CI=2.28


[105-123 ]:
1p90a_PU2_105-123
CI=0.28


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1p90a_PU_1-27
CI=1.27


[28-47]:
1p90a_PU_28-47
CI=2.64


[48-64]:
1p90a_PU_48-64
CI=0.65


[65-88]:
1p90a_PU_65-88
CI=0.84


[89-104]:
1p90a_PU_89-104
CI=0.00


[105-123 ]:
1p90a_PU_105-123
CI=0.28