Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-150]:
1p9ag_PU0_1-150
CI=5.52


[151-266 ]:
1p9ag_PU0_151-266
CI=4.14


Level 1
PU
Molecule needs Java 1.4 Structure


[1-76]:
1p9ag_PU1_1-76
CI=4.08


[77-150]:
1p9ag_PU1_77-150
CI=5.17


[151-266 ]:
1p9ag_PU1_151-266
CI=4.14


Level 2
PU
Molecule needs Java 1.4 Structure


[1-76]:
1p9ag_PU2_1-76
CI=4.08


[77-150]:
1p9ag_PU2_77-150
CI=5.17


[151-202]:
1p9ag_PU2_151-202
CI=3.69


[203-266 ]:
1p9ag_PU2_203-266
CI=2.79


Level 3
PU
Molecule needs Java 1.4 Structure


[1-76]:
1p9ag_PU3_1-76
CI=4.08


[77-150]:
1p9ag_PU3_77-150
CI=5.17


[151-202]:
1p9ag_PU3_151-202
CI=3.69


[203-218]:
1p9ag_PU3_203-218
CI=0.11


[219-244]:
1p9ag_PU3_219-244
CI=1.58


[245-266 ]:
1p9ag_PU3_245-266
CI=1.03


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1p9ag_PU4_1-17
CI=1.85


[18-76]:
1p9ag_PU4_18-76
CI=3.79


[77-150]:
1p9ag_PU4_77-150
CI=5.17


[151-202]:
1p9ag_PU4_151-202
CI=3.69


[203-218]:
1p9ag_PU4_203-218
CI=0.11


[219-244]:
1p9ag_PU4_219-244
CI=1.58


[245-266 ]:
1p9ag_PU4_245-266
CI=1.03


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1p9ag_PU5_1-17
CI=1.85


[18-76]:
1p9ag_PU5_18-76
CI=3.79


[77-111]:
1p9ag_PU5_77-111
CI=3.10


[112-150]:
1p9ag_PU5_112-150
CI=2.45


[151-202]:
1p9ag_PU5_151-202
CI=3.69


[203-218]:
1p9ag_PU5_203-218
CI=0.11


[219-244]:
1p9ag_PU5_219-244
CI=1.58


[245-266 ]:
1p9ag_PU5_245-266
CI=1.03


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1p9ag_PU6_1-17
CI=1.85


[18-42]:
1p9ag_PU6_18-42
CI=1.37


[43-76]:
1p9ag_PU6_43-76
CI=2.28


[77-111]:
1p9ag_PU6_77-111
CI=3.10


[112-150]:
1p9ag_PU6_112-150
CI=2.45


[151-202]:
1p9ag_PU6_151-202
CI=3.69


[203-218]:
1p9ag_PU6_203-218
CI=0.11


[219-244]:
1p9ag_PU6_219-244
CI=1.58


[245-266 ]:
1p9ag_PU6_245-266
CI=1.03


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1p9ag_PU7_1-17
CI=1.85


[18-42]:
1p9ag_PU7_18-42
CI=1.37


[43-76]:
1p9ag_PU7_43-76
CI=2.28


[77-111]:
1p9ag_PU7_77-111
CI=3.10


[112-150]:
1p9ag_PU7_112-150
CI=2.45


[151-186]:
1p9ag_PU7_151-186
CI=2.81


[187-202]:
1p9ag_PU7_187-202
CI=0.00


[203-218]:
1p9ag_PU7_203-218
CI=0.11


[219-244]:
1p9ag_PU7_219-244
CI=1.58


[245-266 ]:
1p9ag_PU7_245-266
CI=1.03


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1p9ag_PU8_1-17
CI=1.85


[18-42]:
1p9ag_PU8_18-42
CI=1.37


[43-60]:
1p9ag_PU8_43-60
CI=0.10


[61-76]:
1p9ag_PU8_61-76
CI=0.00


[77-111]:
1p9ag_PU8_77-111
CI=3.10


[112-150]:
1p9ag_PU8_112-150
CI=2.45


[151-186]:
1p9ag_PU8_151-186
CI=2.81


[187-202]:
1p9ag_PU8_187-202
CI=0.00


[203-218]:
1p9ag_PU8_203-218
CI=0.11


[219-244]:
1p9ag_PU8_219-244
CI=1.58


[245-266 ]:
1p9ag_PU8_245-266
CI=1.03


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1p9ag_PU9_1-17
CI=1.85


[18-42]:
1p9ag_PU9_18-42
CI=1.37


[43-60]:
1p9ag_PU9_43-60
CI=0.10


[61-76]:
1p9ag_PU9_61-76
CI=0.00


[77-111]:
1p9ag_PU9_77-111
CI=3.10


[112-134]:
1p9ag_PU9_112-134
CI=0.24


[135-150]:
1p9ag_PU9_135-150
CI=0.00


[151-186]:
1p9ag_PU9_151-186
CI=2.81


[187-202]:
1p9ag_PU9_187-202
CI=0.00


[203-218]:
1p9ag_PU9_203-218
CI=0.11


[219-244]:
1p9ag_PU9_219-244
CI=1.58


[245-266 ]:
1p9ag_PU9_245-266
CI=1.03


Level 10
PU
Molecule needs Java 1.4 Structure


[1-17]:
1p9ag_PU10_1-17
CI=1.85


[18-42]:
1p9ag_PU10_18-42
CI=1.37


[43-60]:
1p9ag_PU10_43-60
CI=0.10


[61-76]:
1p9ag_PU10_61-76
CI=0.00


[77-111]:
1p9ag_PU10_77-111
CI=3.10


[112-134]:
1p9ag_PU10_112-134
CI=0.24


[135-150]:
1p9ag_PU10_135-150
CI=0.00


[151-167]:
1p9ag_PU10_151-167
CI=0.00


[168-186]:
1p9ag_PU10_168-186
CI=0.00


[187-202]:
1p9ag_PU10_187-202
CI=0.00


[203-218]:
1p9ag_PU10_203-218
CI=0.11


[219-244]:
1p9ag_PU10_219-244
CI=1.58


[245-266 ]:
1p9ag_PU10_245-266
CI=1.03


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-17]:
1p9ag_PU_1-17
CI=1.85


[18-42]:
1p9ag_PU_18-42
CI=1.37


[43-60]:
1p9ag_PU_43-60
CI=0.10


[61-76]:
1p9ag_PU_61-76
CI=0.00


[77-93]:
1p9ag_PU_77-93
CI=0.00


[94-111]:
1p9ag_PU_94-111
CI=0.00


[112-134]:
1p9ag_PU_112-134
CI=0.24


[135-150]:
1p9ag_PU_135-150
CI=0.00


[151-167]:
1p9ag_PU_151-167
CI=0.00


[168-186]:
1p9ag_PU_168-186
CI=0.00


[187-202]:
1p9ag_PU_187-202
CI=0.00


[203-218]:
1p9ag_PU_203-218
CI=0.11


[219-244]:
1p9ag_PU_219-244
CI=1.58


[245-266 ]:
1p9ag_PU_245-266
CI=1.03