Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-30]:
1pa1a_PU0_1-30
CI=0.12


[31-302 ]:
1pa1a_PU0_31-302
CI=4.53


Level 1
PU
Molecule needs Java 1.4 Structure


[1-30]:
1pa1a_PU1_1-30
CI=0.12


[31-128]:
1pa1a_PU1_31-128
CI=2.69


[129-177]:
1pa1a_PU1_129-177
CI=4.02


[178-302 ]:
1pa1a_PU1_178-302
CI=2.26


Level 2
PU
Molecule needs Java 1.4 Structure


[1-30]:
1pa1a_PU2_1-30
CI=0.12


[31-89]:
1pa1a_PU2_31-89
CI=2.76


[90-128]:
1pa1a_PU2_90-128
CI=1.74


[129-177]:
1pa1a_PU2_129-177
CI=4.02


[178-302 ]:
1pa1a_PU2_178-302
CI=2.26


Level 3
PU
Molecule needs Java 1.4 Structure


[1-30]:
1pa1a_PU3_1-30
CI=0.12


[31-89]:
1pa1a_PU3_31-89
CI=2.76


[90-128]:
1pa1a_PU3_90-128
CI=1.74


[129-177]:
1pa1a_PU3_129-177
CI=4.02


[178-218]:
1pa1a_PU3_178-218
CI=0.83


[219-288]:
1pa1a_PU3_219-288
CI=2.02


[289-302 ]:
1pa1a_PU3_289-302
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-30]:
1pa1a_PU4_1-30
CI=0.12


[31-89]:
1pa1a_PU4_31-89
CI=2.76


[90-128]:
1pa1a_PU4_90-128
CI=1.74


[129-177]:
1pa1a_PU4_129-177
CI=4.02


[178-201]:
1pa1a_PU4_178-201
CI=0.77


[202-218]:
1pa1a_PU4_202-218
CI=0.75


[219-288]:
1pa1a_PU4_219-288
CI=2.02


[289-302 ]:
1pa1a_PU4_289-302
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-30]:
1pa1a_PU5_1-30
CI=0.12


[31-54]:
1pa1a_PU5_31-54
CI=0.46


[55-89]:
1pa1a_PU5_55-89
CI=2.94


[90-128]:
1pa1a_PU5_90-128
CI=1.74


[129-177]:
1pa1a_PU5_129-177
CI=4.02


[178-201]:
1pa1a_PU5_178-201
CI=0.77


[202-218]:
1pa1a_PU5_202-218
CI=0.75


[219-288]:
1pa1a_PU5_219-288
CI=2.02


[289-302 ]:
1pa1a_PU5_289-302
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-30]:
1pa1a_PU6_1-30
CI=0.12


[31-54]:
1pa1a_PU6_31-54
CI=0.46


[55-89]:
1pa1a_PU6_55-89
CI=2.94


[90-112]:
1pa1a_PU6_90-112
CI=0.32


[113-128]:
1pa1a_PU6_113-128
CI=1.15


[129-177]:
1pa1a_PU6_129-177
CI=4.02


[178-201]:
1pa1a_PU6_178-201
CI=0.77


[202-218]:
1pa1a_PU6_202-218
CI=0.75


[219-288]:
1pa1a_PU6_219-288
CI=2.02


[289-302 ]:
1pa1a_PU6_289-302
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-30]:
1pa1a_PU7_1-30
CI=0.12


[31-54]:
1pa1a_PU7_31-54
CI=0.46


[55-89]:
1pa1a_PU7_55-89
CI=2.94


[90-112]:
1pa1a_PU7_90-112
CI=0.32


[113-128]:
1pa1a_PU7_113-128
CI=1.15


[129-177]:
1pa1a_PU7_129-177
CI=4.02


[178-201]:
1pa1a_PU7_178-201
CI=0.77


[202-218]:
1pa1a_PU7_202-218
CI=0.75


[219-247]:
1pa1a_PU7_219-247
CI=0.57


[248-264]:
1pa1a_PU7_248-264
CI=0.33


[265-288]:
1pa1a_PU7_265-288
CI=0.08


[289-302 ]:
1pa1a_PU7_289-302
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-30]:
1pa1a_PU_1-30
CI=0.12


[31-54]:
1pa1a_PU_31-54
CI=0.46


[55-89]:
1pa1a_PU_55-89
CI=2.94


[90-112]:
1pa1a_PU_90-112
CI=0.32


[113-128]:
1pa1a_PU_113-128
CI=1.15


[129-148]:
1pa1a_PU_129-148
CI=2.90


[149-177]:
1pa1a_PU_149-177
CI=2.76


[178-201]:
1pa1a_PU_178-201
CI=0.77


[202-218]:
1pa1a_PU_202-218
CI=0.75


[219-247]:
1pa1a_PU_219-247
CI=0.57


[248-264]:
1pa1a_PU_248-264
CI=0.33


[265-288]:
1pa1a_PU_265-288
CI=0.08


[289-302 ]:
1pa1a_PU_289-302
CI=0.00