Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-33]:
1pa7a_PU0_1-33
CI=0.40


[34-108]:
1pa7a_PU0_34-108
CI=3.12


[109-130 ]:
1pa7a_PU0_109-130
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1pa7a_PU1_1-17
CI=0.00


[18-33]:
1pa7a_PU1_18-33
CI=0.79


[34-108]:
1pa7a_PU1_34-108
CI=3.12


[109-130 ]:
1pa7a_PU1_109-130
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1pa7a_PU2_1-17
CI=0.00


[18-33]:
1pa7a_PU2_18-33
CI=0.79


[34-88]:
1pa7a_PU2_34-88
CI=2.36


[89-108]:
1pa7a_PU2_89-108
CI=0.63


[109-130 ]:
1pa7a_PU2_109-130
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1pa7a_PU_1-17
CI=0.00


[18-33]:
1pa7a_PU_18-33
CI=0.79


[34-64]:
1pa7a_PU_34-64
CI=1.09


[65-88]:
1pa7a_PU_65-88
CI=0.38


[89-108]:
1pa7a_PU_89-108
CI=0.63


[109-130 ]:
1pa7a_PU_109-130
CI=0.00