Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-131]:
1pb7a_PU0_1-131
CI=3.57


[132-239]:
1pb7a_PU0_132-239
CI=3.62


[240-281 ]:
1pb7a_PU0_240-281
CI=0.32


Level 1
PU
Molecule needs Java 1.4 Structure


[1-131]:
1pb7a_PU1_1-131
CI=3.57


[132-239]:
1pb7a_PU1_132-239
CI=3.62


[240-258]:
1pb7a_PU1_240-258
CI=0.19


[259-281 ]:
1pb7a_PU1_259-281
CI=0.33


Level 2
PU
Molecule needs Java 1.4 Structure


[1-114]:
1pb7a_PU2_1-114
CI=3.97


[115-131]:
1pb7a_PU2_115-131
CI=0.22


[132-239]:
1pb7a_PU2_132-239
CI=3.62


[240-258]:
1pb7a_PU2_240-258
CI=0.19


[259-281 ]:
1pb7a_PU2_259-281
CI=0.33


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pb7a_PU3_1-18
CI=0.51


[19-36]:
1pb7a_PU3_19-36
CI=1.04


[37-114]:
1pb7a_PU3_37-114
CI=2.68


[115-131]:
1pb7a_PU3_115-131
CI=0.22


[132-239]:
1pb7a_PU3_132-239
CI=3.62


[240-258]:
1pb7a_PU3_240-258
CI=0.19


[259-281 ]:
1pb7a_PU3_259-281
CI=0.33


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pb7a_PU4_1-18
CI=0.51


[19-36]:
1pb7a_PU4_19-36
CI=1.04


[37-75]:
1pb7a_PU4_37-75
CI=2.06


[76-114]:
1pb7a_PU4_76-114
CI=2.69


[115-131]:
1pb7a_PU4_115-131
CI=0.22


[132-239]:
1pb7a_PU4_132-239
CI=3.62


[240-258]:
1pb7a_PU4_240-258
CI=0.19


[259-281 ]:
1pb7a_PU4_259-281
CI=0.33


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pb7a_PU5_1-18
CI=0.51


[19-36]:
1pb7a_PU5_19-36
CI=1.04


[37-75]:
1pb7a_PU5_37-75
CI=2.06


[76-114]:
1pb7a_PU5_76-114
CI=2.69


[115-131]:
1pb7a_PU5_115-131
CI=0.22


[132-148]:
1pb7a_PU5_132-148
CI=0.21


[149-194]:
1pb7a_PU5_149-194
CI=2.24


[195-239]:
1pb7a_PU5_195-239
CI=1.00


[240-258]:
1pb7a_PU5_240-258
CI=0.19


[259-281 ]:
1pb7a_PU5_259-281
CI=0.33


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pb7a_PU6_1-18
CI=0.51


[19-36]:
1pb7a_PU6_19-36
CI=1.04


[37-75]:
1pb7a_PU6_37-75
CI=2.06


[76-114]:
1pb7a_PU6_76-114
CI=2.69


[115-131]:
1pb7a_PU6_115-131
CI=0.22


[132-148]:
1pb7a_PU6_132-148
CI=0.21


[149-194]:
1pb7a_PU6_149-194
CI=2.24


[195-213]:
1pb7a_PU6_195-213
CI=0.87


[214-239]:
1pb7a_PU6_214-239
CI=0.72


[240-258]:
1pb7a_PU6_240-258
CI=0.19


[259-281 ]:
1pb7a_PU6_259-281
CI=0.33


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pb7a_PU7_1-18
CI=0.51


[19-36]:
1pb7a_PU7_19-36
CI=1.04


[37-53]:
1pb7a_PU7_37-53
CI=2.31


[54-75]:
1pb7a_PU7_54-75
CI=0.17


[76-114]:
1pb7a_PU7_76-114
CI=2.69


[115-131]:
1pb7a_PU7_115-131
CI=0.22


[132-148]:
1pb7a_PU7_132-148
CI=0.21


[149-194]:
1pb7a_PU7_149-194
CI=2.24


[195-213]:
1pb7a_PU7_195-213
CI=0.87


[214-239]:
1pb7a_PU7_214-239
CI=0.72


[240-258]:
1pb7a_PU7_240-258
CI=0.19


[259-281 ]:
1pb7a_PU7_259-281
CI=0.33


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pb7a_PU8_1-18
CI=0.51


[19-36]:
1pb7a_PU8_19-36
CI=1.04


[37-53]:
1pb7a_PU8_37-53
CI=2.31


[54-75]:
1pb7a_PU8_54-75
CI=0.17


[76-96]:
1pb7a_PU8_76-96
CI=1.79


[97-114]:
1pb7a_PU8_97-114
CI=1.32


[115-131]:
1pb7a_PU8_115-131
CI=0.22


[132-148]:
1pb7a_PU8_132-148
CI=0.21


[149-194]:
1pb7a_PU8_149-194
CI=2.24


[195-213]:
1pb7a_PU8_195-213
CI=0.87


[214-239]:
1pb7a_PU8_214-239
CI=0.72


[240-258]:
1pb7a_PU8_240-258
CI=0.19


[259-281 ]:
1pb7a_PU8_259-281
CI=0.33


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-18]:
1pb7a_PU_1-18
CI=0.51


[19-36]:
1pb7a_PU_19-36
CI=1.04


[37-53]:
1pb7a_PU_37-53
CI=2.31


[54-75]:
1pb7a_PU_54-75
CI=0.17


[76-96]:
1pb7a_PU_76-96
CI=1.79


[97-114]:
1pb7a_PU_97-114
CI=1.32


[115-131]:
1pb7a_PU_115-131
CI=0.22


[132-148]:
1pb7a_PU_132-148
CI=0.21


[149-165]:
1pb7a_PU_149-165
CI=0.21


[166-194]:
1pb7a_PU_166-194
CI=0.97


[195-213]:
1pb7a_PU_195-213
CI=0.87


[214-239]:
1pb7a_PU_214-239
CI=0.72


[240-258]:
1pb7a_PU_240-258
CI=0.19


[259-281 ]:
1pb7a_PU_259-281
CI=0.33