Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-68]:
1pbja_PU0_1-68
CI=3.41


[69-116 ]:
1pbja_PU0_69-116
CI=2.43


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1pbja_PU1_1-46
CI=2.53


[47-68]:
1pbja_PU1_47-68
CI=0.41


[69-116 ]:
1pbja_PU1_69-116
CI=2.43


Level 2
PU
Molecule needs Java 1.4 Structure


[1-46]:
1pbja_PU2_1-46
CI=2.53


[47-68]:
1pbja_PU2_47-68
CI=0.41


[69-92]:
1pbja_PU2_69-92
CI=0.46


[93-116 ]:
1pbja_PU2_93-116
CI=1.97


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-30]:
1pbja_PU_1-30
CI=0.13


[31-46]:
1pbja_PU_31-46
CI=2.55


[47-68]:
1pbja_PU_47-68
CI=0.41


[69-92]:
1pbja_PU_69-92
CI=0.46


[93-116 ]:
1pbja_PU_93-116
CI=1.97