Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-208]:
1pe9a_PU0_1-208
CI=5.79


[209-353]:
1pe9a_PU0_209-353
CI=5.50


[354-361 ]:
1pe9a_PU0_354-361
CI=0.21


Level 1
PU
Molecule needs Java 1.4 Structure


[1-100]:
1pe9a_PU1_1-100
CI=3.31


[101-208]:
1pe9a_PU1_101-208
CI=5.52


[209-353]:
1pe9a_PU1_209-353
CI=5.50


[354-361 ]:
1pe9a_PU1_354-361
CI=0.21


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1pe9a_PU2_1-25
CI=0.83


[26-100]:
1pe9a_PU2_26-100
CI=3.53


[101-208]:
1pe9a_PU2_101-208
CI=5.52


[209-353]:
1pe9a_PU2_209-353
CI=5.50


[354-361 ]:
1pe9a_PU2_354-361
CI=0.21


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1pe9a_PU3_1-25
CI=0.83


[26-59]:
1pe9a_PU3_26-59
CI=2.56


[60-83]:
1pe9a_PU3_60-83
CI=0.69


[84-100]:
1pe9a_PU3_84-100
CI=0.10


[101-208]:
1pe9a_PU3_101-208
CI=5.52


[209-353]:
1pe9a_PU3_209-353
CI=5.50


[354-361 ]:
1pe9a_PU3_354-361
CI=0.21


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1pe9a_PU4_1-25
CI=0.83


[26-59]:
1pe9a_PU4_26-59
CI=2.56


[60-83]:
1pe9a_PU4_60-83
CI=0.69


[84-100]:
1pe9a_PU4_84-100
CI=0.10


[101-165]:
1pe9a_PU4_101-165
CI=4.25


[166-181]:
1pe9a_PU4_166-181
CI=0.81


[182-208]:
1pe9a_PU4_182-208
CI=1.10


[209-353]:
1pe9a_PU4_209-353
CI=5.50


[354-361 ]:
1pe9a_PU4_354-361
CI=0.21


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1pe9a_PU5_1-25
CI=0.83


[26-59]:
1pe9a_PU5_26-59
CI=2.56


[60-83]:
1pe9a_PU5_60-83
CI=0.69


[84-100]:
1pe9a_PU5_84-100
CI=0.10


[101-124]:
1pe9a_PU5_101-124
CI=0.69


[125-143]:
1pe9a_PU5_125-143
CI=1.76


[144-165]:
1pe9a_PU5_144-165
CI=0.25


[166-181]:
1pe9a_PU5_166-181
CI=0.81


[182-208]:
1pe9a_PU5_182-208
CI=1.10


[209-353]:
1pe9a_PU5_209-353
CI=5.50


[354-361 ]:
1pe9a_PU5_354-361
CI=0.21


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1pe9a_PU6_1-25
CI=0.83


[26-59]:
1pe9a_PU6_26-59
CI=2.56


[60-83]:
1pe9a_PU6_60-83
CI=0.69


[84-100]:
1pe9a_PU6_84-100
CI=0.10


[101-124]:
1pe9a_PU6_101-124
CI=0.69


[125-143]:
1pe9a_PU6_125-143
CI=1.76


[144-165]:
1pe9a_PU6_144-165
CI=0.25


[166-181]:
1pe9a_PU6_166-181
CI=0.81


[182-208]:
1pe9a_PU6_182-208
CI=1.10


[209-332]:
1pe9a_PU6_209-332
CI=5.91


[333-353]:
1pe9a_PU6_333-353
CI=0.00


[354-361 ]:
1pe9a_PU6_354-361
CI=0.21


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1pe9a_PU7_1-25
CI=0.83


[26-59]:
1pe9a_PU7_26-59
CI=2.56


[60-83]:
1pe9a_PU7_60-83
CI=0.69


[84-100]:
1pe9a_PU7_84-100
CI=0.10


[101-124]:
1pe9a_PU7_101-124
CI=0.69


[125-143]:
1pe9a_PU7_125-143
CI=1.76


[144-165]:
1pe9a_PU7_144-165
CI=0.25


[166-181]:
1pe9a_PU7_166-181
CI=0.81


[182-208]:
1pe9a_PU7_182-208
CI=1.10


[209-282]:
1pe9a_PU7_209-282
CI=5.19


[283-332]:
1pe9a_PU7_283-332
CI=2.80


[333-353]:
1pe9a_PU7_333-353
CI=0.00


[354-361 ]:
1pe9a_PU7_354-361
CI=0.21


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1pe9a_PU8_1-25
CI=0.83


[26-59]:
1pe9a_PU8_26-59
CI=2.56


[60-83]:
1pe9a_PU8_60-83
CI=0.69


[84-100]:
1pe9a_PU8_84-100
CI=0.10


[101-124]:
1pe9a_PU8_101-124
CI=0.69


[125-143]:
1pe9a_PU8_125-143
CI=1.76


[144-165]:
1pe9a_PU8_144-165
CI=0.25


[166-181]:
1pe9a_PU8_166-181
CI=0.81


[182-208]:
1pe9a_PU8_182-208
CI=1.10


[209-225]:
1pe9a_PU8_209-225
CI=0.11


[226-282]:
1pe9a_PU8_226-282
CI=4.83


[283-332]:
1pe9a_PU8_283-332
CI=2.80


[333-353]:
1pe9a_PU8_333-353
CI=0.00


[354-361 ]:
1pe9a_PU8_354-361
CI=0.21


Level 9
PU
Molecule needs Java 1.4 Structure


[1-25]:
1pe9a_PU9_1-25
CI=0.83


[26-59]:
1pe9a_PU9_26-59
CI=2.56


[60-83]:
1pe9a_PU9_60-83
CI=0.69


[84-100]:
1pe9a_PU9_84-100
CI=0.10


[101-124]:
1pe9a_PU9_101-124
CI=0.69


[125-143]:
1pe9a_PU9_125-143
CI=1.76


[144-165]:
1pe9a_PU9_144-165
CI=0.25


[166-181]:
1pe9a_PU9_166-181
CI=0.81


[182-208]:
1pe9a_PU9_182-208
CI=1.10


[209-225]:
1pe9a_PU9_209-225
CI=0.11


[226-282]:
1pe9a_PU9_226-282
CI=4.83


[283-300]:
1pe9a_PU9_283-300
CI=0.20


[301-332]:
1pe9a_PU9_301-332
CI=1.72


[333-353]:
1pe9a_PU9_333-353
CI=0.00


[354-361 ]:
1pe9a_PU9_354-361
CI=0.21


Level 10
PU
Molecule needs Java 1.4 Structure


[1-25]:
1pe9a_PU10_1-25
CI=0.83


[26-59]:
1pe9a_PU10_26-59
CI=2.56


[60-83]:
1pe9a_PU10_60-83
CI=0.69


[84-100]:
1pe9a_PU10_84-100
CI=0.10


[101-124]:
1pe9a_PU10_101-124
CI=0.69


[125-143]:
1pe9a_PU10_125-143
CI=1.76


[144-165]:
1pe9a_PU10_144-165
CI=0.25


[166-181]:
1pe9a_PU10_166-181
CI=0.81


[182-208]:
1pe9a_PU10_182-208
CI=1.10


[209-225]:
1pe9a_PU10_209-225
CI=0.11


[226-259]:
1pe9a_PU10_226-259
CI=3.18


[260-282]:
1pe9a_PU10_260-282
CI=0.65


[283-300]:
1pe9a_PU10_283-300
CI=0.20


[301-332]:
1pe9a_PU10_301-332
CI=1.72


[333-353]:
1pe9a_PU10_333-353
CI=0.00


[354-361 ]:
1pe9a_PU10_354-361
CI=0.21


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-25]:
1pe9a_PU_1-25
CI=0.83


[26-59]:
1pe9a_PU_26-59
CI=2.56


[60-83]:
1pe9a_PU_60-83
CI=0.69


[84-100]:
1pe9a_PU_84-100
CI=0.10


[101-124]:
1pe9a_PU_101-124
CI=0.69


[125-143]:
1pe9a_PU_125-143
CI=1.76


[144-165]:
1pe9a_PU_144-165
CI=0.25


[166-181]:
1pe9a_PU_166-181
CI=0.81


[182-208]:
1pe9a_PU_182-208
CI=1.10


[209-225]:
1pe9a_PU_209-225
CI=0.11


[226-242]:
1pe9a_PU_226-242
CI=0.11


[243-259]:
1pe9a_PU_243-259
CI=0.21


[260-282]:
1pe9a_PU_260-282
CI=0.65


[283-300]:
1pe9a_PU_283-300
CI=0.20


[301-332]:
1pe9a_PU_301-332
CI=1.72


[333-353]:
1pe9a_PU_333-353
CI=0.00


[354-361 ]:
1pe9a_PU_354-361
CI=0.21