Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-135]:
1pgs0_PU0_1-135
CI=5.31


[136-311 ]:
1pgs0_PU0_136-311
CI=5.26


Level 1
PU
Molecule needs Java 1.4 Structure


[1-135]:
1pgs0_PU1_1-135
CI=5.31


[136-223]:
1pgs0_PU1_136-223
CI=1.71


[224-253]:
1pgs0_PU1_224-253
CI=2.27


[254-311 ]:
1pgs0_PU1_254-311
CI=0.13


Level 2
PU
Molecule needs Java 1.4 Structure


[1-135]:
1pgs0_PU2_1-135
CI=5.31


[136-186]:
1pgs0_PU2_136-186
CI=0.52


[187-223]:
1pgs0_PU2_187-223
CI=2.90


[224-253]:
1pgs0_PU2_224-253
CI=2.27


[254-311 ]:
1pgs0_PU2_254-311
CI=0.13


Level 3
PU
Molecule needs Java 1.4 Structure


[1-135]:
1pgs0_PU3_1-135
CI=5.31


[136-186]:
1pgs0_PU3_136-186
CI=0.52


[187-205]:
1pgs0_PU3_187-205
CI=3.24


[206-223]:
1pgs0_PU3_206-223
CI=2.39


[224-253]:
1pgs0_PU3_224-253
CI=2.27


[254-311 ]:
1pgs0_PU3_254-311
CI=0.13


Level 4
PU
Molecule needs Java 1.4 Structure


[1-135]:
1pgs0_PU4_1-135
CI=5.31


[136-186]:
1pgs0_PU4_136-186
CI=0.52


[187-205]:
1pgs0_PU4_187-205
CI=3.24


[206-223]:
1pgs0_PU4_206-223
CI=2.39


[224-253]:
1pgs0_PU4_224-253
CI=2.27


[254-295]:
1pgs0_PU4_254-295
CI=0.09


[296-311 ]:
1pgs0_PU4_296-311
CI=0.22


Level 5
PU
Molecule needs Java 1.4 Structure


[1-135]:
1pgs0_PU5_1-135
CI=5.31


[136-186]:
1pgs0_PU5_136-186
CI=0.52


[187-205]:
1pgs0_PU5_187-205
CI=3.24


[206-223]:
1pgs0_PU5_206-223
CI=2.39


[224-253]:
1pgs0_PU5_224-253
CI=2.27


[254-274]:
1pgs0_PU5_254-274
CI=0.00


[275-295]:
1pgs0_PU5_275-295
CI=0.18


[296-311 ]:
1pgs0_PU5_296-311
CI=0.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-135]:
1pgs0_PU6_1-135
CI=5.31


[136-170]:
1pgs0_PU6_136-170
CI=0.49


[171-186]:
1pgs0_PU6_171-186
CI=0.11


[187-205]:
1pgs0_PU6_187-205
CI=3.24


[206-223]:
1pgs0_PU6_206-223
CI=2.39


[224-253]:
1pgs0_PU6_224-253
CI=2.27


[254-274]:
1pgs0_PU6_254-274
CI=0.00


[275-295]:
1pgs0_PU6_275-295
CI=0.18


[296-311 ]:
1pgs0_PU6_296-311
CI=0.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-135]:
1pgs0_PU7_1-135
CI=5.31


[136-154]:
1pgs0_PU7_136-154
CI=0.10


[155-170]:
1pgs0_PU7_155-170
CI=0.11


[171-186]:
1pgs0_PU7_171-186
CI=0.11


[187-205]:
1pgs0_PU7_187-205
CI=3.24


[206-223]:
1pgs0_PU7_206-223
CI=2.39


[224-253]:
1pgs0_PU7_224-253
CI=2.27


[254-274]:
1pgs0_PU7_254-274
CI=0.00


[275-295]:
1pgs0_PU7_275-295
CI=0.18


[296-311 ]:
1pgs0_PU7_296-311
CI=0.22


Level 8
PU
Molecule needs Java 1.4 Structure


[1-42]:
1pgs0_PU8_1-42
CI=0.73


[43-95]:
1pgs0_PU8_43-95
CI=3.30


[96-135]:
1pgs0_PU8_96-135
CI=0.14


[136-154]:
1pgs0_PU8_136-154
CI=0.10


[155-170]:
1pgs0_PU8_155-170
CI=0.11


[171-186]:
1pgs0_PU8_171-186
CI=0.11


[187-205]:
1pgs0_PU8_187-205
CI=3.24


[206-223]:
1pgs0_PU8_206-223
CI=2.39


[224-253]:
1pgs0_PU8_224-253
CI=2.27


[254-274]:
1pgs0_PU8_254-274
CI=0.00


[275-295]:
1pgs0_PU8_275-295
CI=0.18


[296-311 ]:
1pgs0_PU8_296-311
CI=0.22


Level 9
PU
Molecule needs Java 1.4 Structure


[1-42]:
1pgs0_PU9_1-42
CI=0.73


[43-95]:
1pgs0_PU9_43-95
CI=3.30


[96-113]:
1pgs0_PU9_96-113
CI=0.00


[114-135]:
1pgs0_PU9_114-135
CI=0.24


[136-154]:
1pgs0_PU9_136-154
CI=0.10


[155-170]:
1pgs0_PU9_155-170
CI=0.11


[171-186]:
1pgs0_PU9_171-186
CI=0.11


[187-205]:
1pgs0_PU9_187-205
CI=3.24


[206-223]:
1pgs0_PU9_206-223
CI=2.39


[224-253]:
1pgs0_PU9_224-253
CI=2.27


[254-274]:
1pgs0_PU9_254-274
CI=0.00


[275-295]:
1pgs0_PU9_275-295
CI=0.18


[296-311 ]:
1pgs0_PU9_296-311
CI=0.22


Level 10
PU
Molecule needs Java 1.4 Structure


[1-21]:
1pgs0_PU10_1-21
CI=0.36


[22-42]:
1pgs0_PU10_22-42
CI=0.00


[43-95]:
1pgs0_PU10_43-95
CI=3.30


[96-113]:
1pgs0_PU10_96-113
CI=0.00


[114-135]:
1pgs0_PU10_114-135
CI=0.24


[136-154]:
1pgs0_PU10_136-154
CI=0.10


[155-170]:
1pgs0_PU10_155-170
CI=0.11


[171-186]:
1pgs0_PU10_171-186
CI=0.11


[187-205]:
1pgs0_PU10_187-205
CI=3.24


[206-223]:
1pgs0_PU10_206-223
CI=2.39


[224-253]:
1pgs0_PU10_224-253
CI=2.27


[254-274]:
1pgs0_PU10_254-274
CI=0.00


[275-295]:
1pgs0_PU10_275-295
CI=0.18


[296-311 ]:
1pgs0_PU10_296-311
CI=0.22


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-21]:
1pgs0_PU_1-21
CI=0.36


[22-42]:
1pgs0_PU_22-42
CI=0.00


[43-79]:
1pgs0_PU_43-79
CI=1.87


[80-95]:
1pgs0_PU_80-95
CI=0.23


[96-113]:
1pgs0_PU_96-113
CI=0.00


[114-135]:
1pgs0_PU_114-135
CI=0.24


[136-154]:
1pgs0_PU_136-154
CI=0.10


[155-170]:
1pgs0_PU_155-170
CI=0.11


[171-186]:
1pgs0_PU_171-186
CI=0.11


[187-205]:
1pgs0_PU_187-205
CI=3.24


[206-223]:
1pgs0_PU_206-223
CI=2.39


[224-253]:
1pgs0_PU_224-253
CI=2.27


[254-274]:
1pgs0_PU_254-274
CI=0.00


[275-295]:
1pgs0_PU_275-295
CI=0.18


[296-311 ]:
1pgs0_PU_296-311
CI=0.22