Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-49]:
1pk6a_PU0_1-49
CI=3.70


[50-116]:
1pk6a_PU0_50-116
CI=4.81


[117-133 ]:
1pk6a_PU0_117-133
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-30]:
1pk6a_PU1_1-30
CI=3.03


[31-49]:
1pk6a_PU1_31-49
CI=1.08


[50-116]:
1pk6a_PU1_50-116
CI=4.81


[117-133 ]:
1pk6a_PU1_117-133
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-30]:
1pk6a_PU2_1-30
CI=3.03


[31-49]:
1pk6a_PU2_31-49
CI=1.08


[50-94]:
1pk6a_PU2_50-94
CI=4.41


[95-116]:
1pk6a_PU2_95-116
CI=0.08


[117-133 ]:
1pk6a_PU2_117-133
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-30]:
1pk6a_PU_1-30
CI=3.03


[31-49]:
1pk6a_PU_31-49
CI=1.08


[50-75]:
1pk6a_PU_50-75
CI=1.29


[76-94]:
1pk6a_PU_76-94
CI=1.06


[95-116]:
1pk6a_PU_95-116
CI=0.08


[117-133 ]:
1pk6a_PU_117-133
CI=0.00