Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-33]:
1pkoa_PU0_1-33
CI=1.73


[34-65]:
1pkoa_PU0_34-65
CI=2.81


[66-123 ]:
1pkoa_PU0_66-123
CI=2.10


Level 1
PU
Molecule needs Java 1.4 Structure


[1-33]:
1pkoa_PU1_1-33
CI=1.73


[34-65]:
1pkoa_PU1_34-65
CI=2.81


[66-83]:
1pkoa_PU1_66-83
CI=2.18


[84-123 ]:
1pkoa_PU1_84-123
CI=1.92


Level 2
PU
Molecule needs Java 1.4 Structure


[1-33]:
1pkoa_PU2_1-33
CI=1.73


[34-65]:
1pkoa_PU2_34-65
CI=2.81


[66-83]:
1pkoa_PU2_66-83
CI=2.18


[84-107]:
1pkoa_PU2_84-107
CI=1.35


[108-123 ]:
1pkoa_PU2_108-123
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1pkoa_PU_1-17
CI=0.00


[18-33]:
1pkoa_PU_18-33
CI=0.00


[34-65]:
1pkoa_PU_34-65
CI=2.81


[66-83]:
1pkoa_PU_66-83
CI=2.18


[84-107]:
1pkoa_PU_84-107
CI=1.35


[108-123 ]:
1pkoa_PU_108-123
CI=0.00