Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-38]:
1plc0_PU0_1-38
CI=3.37


[39-61]:
1plc0_PU0_39-61
CI=1.20


[62-99 ]:
1plc0_PU0_62-99
CI=1.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-38]:
1plc0_PU1_1-38
CI=3.37


[39-61]:
1plc0_PU1_39-61
CI=1.20


[62-82]:
1plc0_PU1_62-82
CI=0.17


[83-99 ]:
1plc0_PU1_83-99
CI=0.86


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1plc0_PU_1-20
CI=1.86


[21-38]:
1plc0_PU_21-38
CI=0.10


[39-61]:
1plc0_PU_39-61
CI=1.20


[62-82]:
1plc0_PU_62-82
CI=0.17


[83-99 ]:
1plc0_PU_83-99
CI=0.86