Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-143]:
1pn2a_PU0_1-143
CI=4.40


[144-269 ]:
1pn2a_PU0_144-269
CI=4.40


Level 1
PU
Molecule needs Java 1.4 Structure


[1-143]:
1pn2a_PU1_1-143
CI=4.40


[144-167]:
1pn2a_PU1_144-167
CI=0.00


[168-200]:
1pn2a_PU1_168-200
CI=2.41


[201-269 ]:
1pn2a_PU1_201-269
CI=4.15


Level 2
PU
Molecule needs Java 1.4 Structure


[1-37]:
1pn2a_PU2_1-37
CI=1.85


[38-143]:
1pn2a_PU2_38-143
CI=4.28


[144-167]:
1pn2a_PU2_144-167
CI=0.00


[168-200]:
1pn2a_PU2_168-200
CI=2.41


[201-269 ]:
1pn2a_PU2_201-269
CI=4.15


Level 3
PU
Molecule needs Java 1.4 Structure


[1-37]:
1pn2a_PU3_1-37
CI=1.85


[38-58]:
1pn2a_PU3_38-58
CI=0.36


[59-143]:
1pn2a_PU3_59-143
CI=4.67


[144-167]:
1pn2a_PU3_144-167
CI=0.00


[168-200]:
1pn2a_PU3_168-200
CI=2.41


[201-269 ]:
1pn2a_PU3_201-269
CI=4.15


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pn2a_PU4_1-19
CI=0.00


[20-37]:
1pn2a_PU4_20-37
CI=2.07


[38-58]:
1pn2a_PU4_38-58
CI=0.36


[59-143]:
1pn2a_PU4_59-143
CI=4.67


[144-167]:
1pn2a_PU4_144-167
CI=0.00


[168-200]:
1pn2a_PU4_168-200
CI=2.41


[201-269 ]:
1pn2a_PU4_201-269
CI=4.15


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pn2a_PU5_1-19
CI=0.00


[20-37]:
1pn2a_PU5_20-37
CI=2.07


[38-58]:
1pn2a_PU5_38-58
CI=0.36


[59-143]:
1pn2a_PU5_59-143
CI=4.67


[144-167]:
1pn2a_PU5_144-167
CI=0.00


[168-200]:
1pn2a_PU5_168-200
CI=2.41


[201-217]:
1pn2a_PU5_201-217
CI=0.11


[218-269 ]:
1pn2a_PU5_218-269
CI=4.50


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pn2a_PU6_1-19
CI=0.00


[20-37]:
1pn2a_PU6_20-37
CI=2.07


[38-58]:
1pn2a_PU6_38-58
CI=0.36


[59-143]:
1pn2a_PU6_59-143
CI=4.67


[144-167]:
1pn2a_PU6_144-167
CI=0.00


[168-184]:
1pn2a_PU6_168-184
CI=0.75


[185-200]:
1pn2a_PU6_185-200
CI=1.37


[201-217]:
1pn2a_PU6_201-217
CI=0.11


[218-269 ]:
1pn2a_PU6_218-269
CI=4.50


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pn2a_PU7_1-19
CI=0.00


[20-37]:
1pn2a_PU7_20-37
CI=2.07


[38-58]:
1pn2a_PU7_38-58
CI=0.36


[59-74]:
1pn2a_PU7_59-74
CI=0.00


[75-123]:
1pn2a_PU7_75-123
CI=3.27


[124-143]:
1pn2a_PU7_124-143
CI=0.00


[144-167]:
1pn2a_PU7_144-167
CI=0.00


[168-184]:
1pn2a_PU7_168-184
CI=0.75


[185-200]:
1pn2a_PU7_185-200
CI=1.37


[201-217]:
1pn2a_PU7_201-217
CI=0.11


[218-269 ]:
1pn2a_PU7_218-269
CI=4.50


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1pn2a_PU8_1-19
CI=0.00


[20-37]:
1pn2a_PU8_20-37
CI=2.07


[38-58]:
1pn2a_PU8_38-58
CI=0.36


[59-74]:
1pn2a_PU8_59-74
CI=0.00


[75-91]:
1pn2a_PU8_75-91
CI=0.00


[92-123]:
1pn2a_PU8_92-123
CI=2.40


[124-143]:
1pn2a_PU8_124-143
CI=0.00


[144-167]:
1pn2a_PU8_144-167
CI=0.00


[168-184]:
1pn2a_PU8_168-184
CI=0.75


[185-200]:
1pn2a_PU8_185-200
CI=1.37


[201-217]:
1pn2a_PU8_201-217
CI=0.11


[218-269 ]:
1pn2a_PU8_218-269
CI=4.50


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-19]:
1pn2a_PU_1-19
CI=0.00


[20-37]:
1pn2a_PU_20-37
CI=2.07


[38-58]:
1pn2a_PU_38-58
CI=0.36


[59-74]:
1pn2a_PU_59-74
CI=0.00


[75-91]:
1pn2a_PU_75-91
CI=0.00


[92-123]:
1pn2a_PU_92-123
CI=2.40


[124-143]:
1pn2a_PU_124-143
CI=0.00


[144-167]:
1pn2a_PU_144-167
CI=0.00


[168-184]:
1pn2a_PU_168-184
CI=0.75


[185-200]:
1pn2a_PU_185-200
CI=1.37


[201-217]:
1pn2a_PU_201-217
CI=0.11


[218-234]:
1pn2a_PU_218-234
CI=0.11


[235-269 ]:
1pn2a_PU_235-269
CI=3.51