Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1pne0_PU0_1-41
CI=2.89


[42-97]:
1pne0_PU0_42-97
CI=2.65


[98-139 ]:
1pne0_PU0_98-139
CI=3.13


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1pne0_PU1_1-41
CI=2.89


[42-74]:
1pne0_PU1_42-74
CI=1.78


[75-97]:
1pne0_PU1_75-97
CI=1.39


[98-139 ]:
1pne0_PU1_98-139
CI=3.13


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1pne0_PU2_1-22
CI=0.92


[23-41]:
1pne0_PU2_23-41
CI=0.99


[42-74]:
1pne0_PU2_42-74
CI=1.78


[75-97]:
1pne0_PU2_75-97
CI=1.39


[98-139 ]:
1pne0_PU2_98-139
CI=3.13


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-22]:
1pne0_PU_1-22
CI=0.92


[23-41]:
1pne0_PU_23-41
CI=0.99


[42-74]:
1pne0_PU_42-74
CI=1.78


[75-97]:
1pne0_PU_75-97
CI=1.39


[98-123]:
1pne0_PU_98-123
CI=2.96


[124-139 ]:
1pne0_PU_124-139
CI=0.00