Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-84]:
1poc0_PU0_1-84
CI=3.29


[85-134 ]:
1poc0_PU0_85-134
CI=3.50


Level 1
PU
Molecule needs Java 1.4 Structure


[1-36]:
1poc0_PU1_1-36
CI=2.75


[37-65]:
1poc0_PU1_37-65
CI=2.68


[66-84]:
1poc0_PU1_66-84
CI=0.96


[85-134 ]:
1poc0_PU1_85-134
CI=3.50


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1poc0_PU2_1-20
CI=1.69


[21-36]:
1poc0_PU2_21-36
CI=0.46


[37-65]:
1poc0_PU2_37-65
CI=2.68


[66-84]:
1poc0_PU2_66-84
CI=0.96


[85-134 ]:
1poc0_PU2_85-134
CI=3.50


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1poc0_PU_1-20
CI=1.69


[21-36]:
1poc0_PU_21-36
CI=0.46


[37-65]:
1poc0_PU_37-65
CI=2.68


[66-84]:
1poc0_PU_66-84
CI=0.96


[85-103]:
1poc0_PU_85-103
CI=0.10


[104-134 ]:
1poc0_PU_104-134
CI=1.59