Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-108]:
1pot0_PU0_1-108
CI=2.13


[109-226]:
1pot0_PU0_109-226
CI=3.84


[227-322 ]:
1pot0_PU0_227-322
CI=1.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-108]:
1pot0_PU1_1-108
CI=2.13


[109-226]:
1pot0_PU1_109-226
CI=3.84


[227-303]:
1pot0_PU1_227-303
CI=1.69


[304-322 ]:
1pot0_PU1_304-322
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-56]:
1pot0_PU2_1-56
CI=2.69


[57-108]:
1pot0_PU2_57-108
CI=1.27


[109-226]:
1pot0_PU2_109-226
CI=3.84


[227-303]:
1pot0_PU2_227-303
CI=1.69


[304-322 ]:
1pot0_PU2_304-322
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-56]:
1pot0_PU3_1-56
CI=2.69


[57-108]:
1pot0_PU3_57-108
CI=1.27


[109-226]:
1pot0_PU3_109-226
CI=3.84


[227-251]:
1pot0_PU3_227-251
CI=0.36


[252-291]:
1pot0_PU3_252-291
CI=2.26


[292-303]:
1pot0_PU3_292-303
CI=0.00


[304-322 ]:
1pot0_PU3_304-322
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-56]:
1pot0_PU4_1-56
CI=2.69


[57-108]:
1pot0_PU4_57-108
CI=1.27


[109-142]:
1pot0_PU4_109-142
CI=0.66


[143-175]:
1pot0_PU4_143-175
CI=1.37


[176-226]:
1pot0_PU4_176-226
CI=1.22


[227-251]:
1pot0_PU4_227-251
CI=0.36


[252-291]:
1pot0_PU4_252-291
CI=2.26


[292-303]:
1pot0_PU4_292-303
CI=0.00


[304-322 ]:
1pot0_PU4_304-322
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-56]:
1pot0_PU5_1-56
CI=2.69


[57-73]:
1pot0_PU5_57-73
CI=0.42


[74-108]:
1pot0_PU5_74-108
CI=0.86


[109-142]:
1pot0_PU5_109-142
CI=0.66


[143-175]:
1pot0_PU5_143-175
CI=1.37


[176-226]:
1pot0_PU5_176-226
CI=1.22


[227-251]:
1pot0_PU5_227-251
CI=0.36


[252-291]:
1pot0_PU5_252-291
CI=2.26


[292-303]:
1pot0_PU5_292-303
CI=0.00


[304-322 ]:
1pot0_PU5_304-322
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-56]:
1pot0_PU6_1-56
CI=2.69


[57-73]:
1pot0_PU6_57-73
CI=0.42


[74-108]:
1pot0_PU6_74-108
CI=0.86


[109-142]:
1pot0_PU6_109-142
CI=0.66


[143-175]:
1pot0_PU6_143-175
CI=1.37


[176-203]:
1pot0_PU6_176-203
CI=1.00


[204-226]:
1pot0_PU6_204-226
CI=0.48


[227-251]:
1pot0_PU6_227-251
CI=0.36


[252-291]:
1pot0_PU6_252-291
CI=2.26


[292-303]:
1pot0_PU6_292-303
CI=0.00


[304-322 ]:
1pot0_PU6_304-322
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-56]:
1pot0_PU7_1-56
CI=2.69


[57-73]:
1pot0_PU7_57-73
CI=0.42


[74-108]:
1pot0_PU7_74-108
CI=0.86


[109-125]:
1pot0_PU7_109-125
CI=0.64


[126-142]:
1pot0_PU7_126-142
CI=0.11


[143-175]:
1pot0_PU7_143-175
CI=1.37


[176-203]:
1pot0_PU7_176-203
CI=1.00


[204-226]:
1pot0_PU7_204-226
CI=0.48


[227-251]:
1pot0_PU7_227-251
CI=0.36


[252-291]:
1pot0_PU7_252-291
CI=2.26


[292-303]:
1pot0_PU7_292-303
CI=0.00


[304-322 ]:
1pot0_PU7_304-322
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-33]:
1pot0_PU8_1-33
CI=2.02


[34-56]:
1pot0_PU8_34-56
CI=0.49


[57-73]:
1pot0_PU8_57-73
CI=0.42


[74-108]:
1pot0_PU8_74-108
CI=0.86


[109-125]:
1pot0_PU8_109-125
CI=0.64


[126-142]:
1pot0_PU8_126-142
CI=0.11


[143-175]:
1pot0_PU8_143-175
CI=1.37


[176-203]:
1pot0_PU8_176-203
CI=1.00


[204-226]:
1pot0_PU8_204-226
CI=0.48


[227-251]:
1pot0_PU8_227-251
CI=0.36


[252-291]:
1pot0_PU8_252-291
CI=2.26


[292-303]:
1pot0_PU8_292-303
CI=0.00


[304-322 ]:
1pot0_PU8_304-322
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-33]:
1pot0_PU9_1-33
CI=2.02


[34-56]:
1pot0_PU9_34-56
CI=0.49


[57-73]:
1pot0_PU9_57-73
CI=0.42


[74-90]:
1pot0_PU9_74-90
CI=0.11


[91-108]:
1pot0_PU9_91-108
CI=0.30


[109-125]:
1pot0_PU9_109-125
CI=0.64


[126-142]:
1pot0_PU9_126-142
CI=0.11


[143-175]:
1pot0_PU9_143-175
CI=1.37


[176-203]:
1pot0_PU9_176-203
CI=1.00


[204-226]:
1pot0_PU9_204-226
CI=0.48


[227-251]:
1pot0_PU9_227-251
CI=0.36


[252-291]:
1pot0_PU9_252-291
CI=2.26


[292-303]:
1pot0_PU9_292-303
CI=0.00


[304-322 ]:
1pot0_PU9_304-322
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-33]:
1pot0_PU_1-33
CI=2.02


[34-56]:
1pot0_PU_34-56
CI=0.49


[57-73]:
1pot0_PU_57-73
CI=0.42


[74-90]:
1pot0_PU_74-90
CI=0.11


[91-108]:
1pot0_PU_91-108
CI=0.30


[109-125]:
1pot0_PU_109-125
CI=0.64


[126-142]:
1pot0_PU_126-142
CI=0.11


[143-175]:
1pot0_PU_143-175
CI=1.37


[176-203]:
1pot0_PU_176-203
CI=1.00


[204-226]:
1pot0_PU_204-226
CI=0.48


[227-251]:
1pot0_PU_227-251
CI=0.36


[252-275]:
1pot0_PU_252-275
CI=1.77


[276-291]:
1pot0_PU_276-291
CI=0.56


[292-303]:
1pot0_PU_292-303
CI=0.00


[304-322 ]:
1pot0_PU_304-322
CI=0.00