Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-57]:
1pq1a_PU0_1-57
CI=0.60


[58-85]:
1pq1a_PU0_58-85
CI=0.59


[86-147 ]:
1pq1a_PU0_86-147
CI=0.79


Level 1
PU
Molecule needs Java 1.4 Structure


[1-28]:
1pq1a_PU1_1-28
CI=0.46


[29-57]:
1pq1a_PU1_29-57
CI=0.13


[58-85]:
1pq1a_PU1_58-85
CI=0.59


[86-147 ]:
1pq1a_PU1_86-147
CI=0.79


Level 2
PU
Molecule needs Java 1.4 Structure


[1-28]:
1pq1a_PU2_1-28
CI=0.46


[29-57]:
1pq1a_PU2_29-57
CI=0.13


[58-85]:
1pq1a_PU2_58-85
CI=0.59


[86-123]:
1pq1a_PU2_86-123
CI=0.74


[124-147 ]:
1pq1a_PU2_124-147
CI=0.38


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-28]:
1pq1a_PU_1-28
CI=0.46


[29-57]:
1pq1a_PU_29-57
CI=0.13


[58-85]:
1pq1a_PU_58-85
CI=0.59


[86-102]:
1pq1a_PU_86-102
CI=0.10


[103-123]:
1pq1a_PU_103-123
CI=0.61


[124-147 ]:
1pq1a_PU_124-147
CI=0.38