Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pqha_PU0_1-16
CI=0.00


[17-91]:
1pqha_PU0_17-91
CI=5.52


[92-118 ]:
1pqha_PU0_92-118
CI=0.50


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pqha_PU1_1-16
CI=0.00


[17-32]:
1pqha_PU1_17-32
CI=0.00


[33-70]:
1pqha_PU1_33-70
CI=3.00


[71-91]:
1pqha_PU1_71-91
CI=0.34


[92-118 ]:
1pqha_PU1_92-118
CI=0.50


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1pqha_PU_1-16
CI=0.00


[17-32]:
1pqha_PU_17-32
CI=0.00


[33-50]:
1pqha_PU_33-50
CI=0.41


[51-70]:
1pqha_PU_51-70
CI=0.18


[71-91]:
1pqha_PU_71-91
CI=0.34


[92-118 ]:
1pqha_PU_92-118
CI=0.50