Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-162]:
1psza_PU0_1-162
CI=3.39


[163-286 ]:
1psza_PU0_163-286
CI=3.42


Level 1
PU
Molecule needs Java 1.4 Structure


[1-94]:
1psza_PU1_1-94
CI=3.08


[95-162]:
1psza_PU1_95-162
CI=1.78


[163-286 ]:
1psza_PU1_163-286
CI=3.42


Level 2
PU
Molecule needs Java 1.4 Structure


[1-94]:
1psza_PU2_1-94
CI=3.08


[95-127]:
1psza_PU2_95-127
CI=2.06


[128-162]:
1psza_PU2_128-162
CI=0.70


[163-286 ]:
1psza_PU2_163-286
CI=3.42


Level 3
PU
Molecule needs Java 1.4 Structure


[1-94]:
1psza_PU3_1-94
CI=3.08


[95-127]:
1psza_PU3_95-127
CI=2.06


[128-146]:
1psza_PU3_128-146
CI=0.59


[147-162]:
1psza_PU3_147-162
CI=0.00


[163-286 ]:
1psza_PU3_163-286
CI=3.42


Level 4
PU
Molecule needs Java 1.4 Structure


[1-94]:
1psza_PU4_1-94
CI=3.08


[95-127]:
1psza_PU4_95-127
CI=2.06


[128-146]:
1psza_PU4_128-146
CI=0.59


[147-162]:
1psza_PU4_147-162
CI=0.00


[163-253]:
1psza_PU4_163-253
CI=2.85


[254-286 ]:
1psza_PU4_254-286
CI=1.60


Level 5
PU
Molecule needs Java 1.4 Structure


[1-94]:
1psza_PU5_1-94
CI=3.08


[95-127]:
1psza_PU5_95-127
CI=2.06


[128-146]:
1psza_PU5_128-146
CI=0.59


[147-162]:
1psza_PU5_147-162
CI=0.00


[163-207]:
1psza_PU5_163-207
CI=2.30


[208-253]:
1psza_PU5_208-253
CI=1.75


[254-286 ]:
1psza_PU5_254-286
CI=1.60


Level 6
PU
Molecule needs Java 1.4 Structure


[1-94]:
1psza_PU6_1-94
CI=3.08


[95-127]:
1psza_PU6_95-127
CI=2.06


[128-146]:
1psza_PU6_128-146
CI=0.59


[147-162]:
1psza_PU6_147-162
CI=0.00


[163-207]:
1psza_PU6_163-207
CI=2.30


[208-224]:
1psza_PU6_208-224
CI=0.00


[225-253]:
1psza_PU6_225-253
CI=1.90


[254-286 ]:
1psza_PU6_254-286
CI=1.60


Level 7
PU
Molecule needs Java 1.4 Structure


[1-43]:
1psza_PU7_1-43
CI=2.09


[44-94]:
1psza_PU7_44-94
CI=2.17


[95-127]:
1psza_PU7_95-127
CI=2.06


[128-146]:
1psza_PU7_128-146
CI=0.59


[147-162]:
1psza_PU7_147-162
CI=0.00


[163-207]:
1psza_PU7_163-207
CI=2.30


[208-224]:
1psza_PU7_208-224
CI=0.00


[225-253]:
1psza_PU7_225-253
CI=1.90


[254-286 ]:
1psza_PU7_254-286
CI=1.60


Level 8
PU
Molecule needs Java 1.4 Structure


[1-43]:
1psza_PU8_1-43
CI=2.09


[44-94]:
1psza_PU8_44-94
CI=2.17


[95-127]:
1psza_PU8_95-127
CI=2.06


[128-146]:
1psza_PU8_128-146
CI=0.59


[147-162]:
1psza_PU8_147-162
CI=0.00


[163-181]:
1psza_PU8_163-181
CI=0.10


[182-207]:
1psza_PU8_182-207
CI=1.61


[208-224]:
1psza_PU8_208-224
CI=0.00


[225-253]:
1psza_PU8_225-253
CI=1.90


[254-286 ]:
1psza_PU8_254-286
CI=1.60


Level 9
PU
Molecule needs Java 1.4 Structure


[1-43]:
1psza_PU9_1-43
CI=2.09


[44-94]:
1psza_PU9_44-94
CI=2.17


[95-127]:
1psza_PU9_95-127
CI=2.06


[128-146]:
1psza_PU9_128-146
CI=0.59


[147-162]:
1psza_PU9_147-162
CI=0.00


[163-181]:
1psza_PU9_163-181
CI=0.10


[182-207]:
1psza_PU9_182-207
CI=1.61


[208-224]:
1psza_PU9_208-224
CI=0.00


[225-253]:
1psza_PU9_225-253
CI=1.90


[254-270]:
1psza_PU9_254-270
CI=1.10


[271-286 ]:
1psza_PU9_271-286
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-43]:
1psza_PU10_1-43
CI=2.09


[44-77]:
1psza_PU10_44-77
CI=1.40


[78-94]:
1psza_PU10_78-94
CI=0.31


[95-127]:
1psza_PU10_95-127
CI=2.06


[128-146]:
1psza_PU10_128-146
CI=0.59


[147-162]:
1psza_PU10_147-162
CI=0.00


[163-181]:
1psza_PU10_163-181
CI=0.10


[182-207]:
1psza_PU10_182-207
CI=1.61


[208-224]:
1psza_PU10_208-224
CI=0.00


[225-253]:
1psza_PU10_225-253
CI=1.90


[254-270]:
1psza_PU10_254-270
CI=1.10


[271-286 ]:
1psza_PU10_271-286
CI=0.00


Level 11
PU
Molecule needs Java 1.4 Structure


[1-17]:
1psza_PU11_1-17
CI=0.11


[18-43]:
1psza_PU11_18-43
CI=0.42


[44-77]:
1psza_PU11_44-77
CI=1.40


[78-94]:
1psza_PU11_78-94
CI=0.31


[95-127]:
1psza_PU11_95-127
CI=2.06


[128-146]:
1psza_PU11_128-146
CI=0.59


[147-162]:
1psza_PU11_147-162
CI=0.00


[163-181]:
1psza_PU11_163-181
CI=0.10


[182-207]:
1psza_PU11_182-207
CI=1.61


[208-224]:
1psza_PU11_208-224
CI=0.00


[225-253]:
1psza_PU11_225-253
CI=1.90


[254-270]:
1psza_PU11_254-270
CI=1.10


[271-286 ]:
1psza_PU11_271-286
CI=0.00


Final level 12

PU
Molecule needs Java 1.4 Structure


[1-17]:
1psza_PU_1-17
CI=0.11


[18-43]:
1psza_PU_18-43
CI=0.42


[44-77]:
1psza_PU_44-77
CI=1.40


[78-94]:
1psza_PU_78-94
CI=0.31


[95-111]:
1psza_PU_95-111
CI=0.32


[112-127]:
1psza_PU_112-127
CI=0.46


[128-146]:
1psza_PU_128-146
CI=0.59


[147-162]:
1psza_PU_147-162
CI=0.00


[163-181]:
1psza_PU_163-181
CI=0.10


[182-207]:
1psza_PU_182-207
CI=1.61


[208-224]:
1psza_PU_208-224
CI=0.00


[225-253]:
1psza_PU_225-253
CI=1.90


[254-270]:
1psza_PU_254-270
CI=1.10


[271-286 ]:
1psza_PU_271-286
CI=0.00