Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-47]:
1puoa_PU0_1-47
CI=1.45


[48-112]:
1puoa_PU0_48-112
CI=1.84


[113-141 ]:
1puoa_PU0_113-141
CI=0.13


Level 1
PU
Molecule needs Java 1.4 Structure


[1-47]:
1puoa_PU1_1-47
CI=1.45


[48-80]:
1puoa_PU1_48-80
CI=0.57


[81-112]:
1puoa_PU1_81-112
CI=1.74


[113-141 ]:
1puoa_PU1_113-141
CI=0.13


Level 2
PU
Molecule needs Java 1.4 Structure


[1-47]:
1puoa_PU2_1-47
CI=1.45


[48-64]:
1puoa_PU2_48-64
CI=0.00


[65-80]:
1puoa_PU2_65-80
CI=0.22


[81-112]:
1puoa_PU2_81-112
CI=1.74


[113-141 ]:
1puoa_PU2_113-141
CI=0.13


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-29]:
1puoa_PU_1-29
CI=0.90


[30-47]:
1puoa_PU_30-47
CI=0.00


[48-64]:
1puoa_PU_48-64
CI=0.00


[65-80]:
1puoa_PU_65-80
CI=0.22


[81-112]:
1puoa_PU_81-112
CI=1.74


[113-141 ]:
1puoa_PU_113-141
CI=0.13