Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-234]:
1pvga_PU0_1-234
CI=4.16


[235-368 ]:
1pvga_PU0_235-368
CI=3.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pvga_PU1_1-18
CI=0.00


[19-234]:
1pvga_PU1_19-234
CI=4.46


[235-368 ]:
1pvga_PU1_235-368
CI=3.18


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pvga_PU2_1-18
CI=0.00


[19-55]:
1pvga_PU2_19-55
CI=3.09


[56-195]:
1pvga_PU2_56-195
CI=4.43


[196-234]:
1pvga_PU2_196-234
CI=1.41


[235-368 ]:
1pvga_PU2_235-368
CI=3.18


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pvga_PU3_1-18
CI=0.00


[19-55]:
1pvga_PU3_19-55
CI=3.09


[56-195]:
1pvga_PU3_56-195
CI=4.43


[196-212]:
1pvga_PU3_196-212
CI=0.00


[213-234]:
1pvga_PU3_213-234
CI=2.12


[235-368 ]:
1pvga_PU3_235-368
CI=3.18


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pvga_PU4_1-18
CI=0.00


[19-55]:
1pvga_PU4_19-55
CI=3.09


[56-114]:
1pvga_PU4_56-114
CI=1.76


[115-135]:
1pvga_PU4_115-135
CI=2.01


[136-195]:
1pvga_PU4_136-195
CI=4.19


[196-212]:
1pvga_PU4_196-212
CI=0.00


[213-234]:
1pvga_PU4_213-234
CI=2.12


[235-368 ]:
1pvga_PU4_235-368
CI=3.18


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pvga_PU5_1-18
CI=0.00


[19-55]:
1pvga_PU5_19-55
CI=3.09


[56-95]:
1pvga_PU5_56-95
CI=1.80


[96-114]:
1pvga_PU5_96-114
CI=1.58


[115-135]:
1pvga_PU5_115-135
CI=2.01


[136-195]:
1pvga_PU5_136-195
CI=4.19


[196-212]:
1pvga_PU5_196-212
CI=0.00


[213-234]:
1pvga_PU5_213-234
CI=2.12


[235-368 ]:
1pvga_PU5_235-368
CI=3.18


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pvga_PU6_1-18
CI=0.00


[19-55]:
1pvga_PU6_19-55
CI=3.09


[56-95]:
1pvga_PU6_56-95
CI=1.80


[96-114]:
1pvga_PU6_96-114
CI=1.58


[115-135]:
1pvga_PU6_115-135
CI=2.01


[136-195]:
1pvga_PU6_136-195
CI=4.19


[196-212]:
1pvga_PU6_196-212
CI=0.00


[213-234]:
1pvga_PU6_213-234
CI=2.12


[235-290]:
1pvga_PU6_235-290
CI=1.39


[291-311]:
1pvga_PU6_291-311
CI=0.88


[312-368 ]:
1pvga_PU6_312-368
CI=0.94


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1pvga_PU7_1-18
CI=0.00


[19-55]:
1pvga_PU7_19-55
CI=3.09


[56-95]:
1pvga_PU7_56-95
CI=1.80


[96-114]:
1pvga_PU7_96-114
CI=1.58


[115-135]:
1pvga_PU7_115-135
CI=2.01


[136-195]:
1pvga_PU7_136-195
CI=4.19


[196-212]:
1pvga_PU7_196-212
CI=0.00


[213-234]:
1pvga_PU7_213-234
CI=2.12


[235-290]:
1pvga_PU7_235-290
CI=1.39


[291-311]:
1pvga_PU7_291-311
CI=0.88


[312-345]:
1pvga_PU7_312-345
CI=1.50


[346-368 ]:
1pvga_PU7_346-368
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1pvga_PU_1-18
CI=0.00


[19-55]:
1pvga_PU_19-55
CI=3.09


[56-95]:
1pvga_PU_56-95
CI=1.80


[96-114]:
1pvga_PU_96-114
CI=1.58


[115-135]:
1pvga_PU_115-135
CI=2.01


[136-195]:
1pvga_PU_136-195
CI=4.19


[196-212]:
1pvga_PU_196-212
CI=0.00


[213-234]:
1pvga_PU_213-234
CI=2.12


[235-271]:
1pvga_PU_235-271
CI=1.49


[272-290]:
1pvga_PU_272-290
CI=1.14


[291-311]:
1pvga_PU_291-311
CI=0.88


[312-345]:
1pvga_PU_312-345
CI=1.50


[346-368 ]:
1pvga_PU_346-368
CI=0.00