Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-58]:
1pwaa_PU0_1-58
CI=4.29


[59-111]:
1pwaa_PU0_59-111
CI=3.73


[112-123 ]:
1pwaa_PU0_112-123
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-58]:
1pwaa_PU1_1-58
CI=4.29


[59-81]:
1pwaa_PU1_59-81
CI=2.93


[82-111]:
1pwaa_PU1_82-111
CI=2.66


[112-123 ]:
1pwaa_PU1_112-123
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1pwaa_PU_1-16
CI=0.12


[17-38]:
1pwaa_PU_17-38
CI=3.24


[39-58]:
1pwaa_PU_39-58
CI=2.25


[59-81]:
1pwaa_PU_59-81
CI=2.93


[82-111]:
1pwaa_PU_82-111
CI=2.66


[112-123 ]:
1pwaa_PU_112-123
CI=0.00