Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1pwba_PU0_1-24
CI=0.00


[25-151 ]:
1pwba_PU0_25-151
CI=4.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1pwba_PU1_1-24
CI=0.00


[25-90]:
1pwba_PU1_25-90
CI=1.76


[91-141]:
1pwba_PU1_91-141
CI=3.06


[142-151 ]:
1pwba_PU1_142-151
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1pwba_PU2_1-24
CI=0.00


[25-46]:
1pwba_PU2_25-46
CI=1.35


[47-64]:
1pwba_PU2_47-64
CI=0.91


[65-90]:
1pwba_PU2_65-90
CI=1.08


[91-141]:
1pwba_PU2_91-141
CI=3.06


[142-151 ]:
1pwba_PU2_142-151
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1pwba_PU_1-24
CI=0.00


[25-46]:
1pwba_PU_25-46
CI=1.35


[47-64]:
1pwba_PU_47-64
CI=0.91


[65-90]:
1pwba_PU_65-90
CI=1.08


[91-110]:
1pwba_PU_91-110
CI=1.70


[111-141]:
1pwba_PU_111-141
CI=3.00


[142-151 ]:
1pwba_PU_142-151
CI=0.00