Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1pxwa_PU0_1-17
CI=0.43


[18-120]:
1pxwa_PU0_18-120
CI=4.82


[121-128 ]:
1pxwa_PU0_121-128
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1pxwa_PU1_1-17
CI=0.43


[18-34]:
1pxwa_PU1_18-34
CI=0.00


[35-107]:
1pxwa_PU1_35-107
CI=4.57


[108-120]:
1pxwa_PU1_108-120
CI=0.28


[121-128 ]:
1pxwa_PU1_121-128
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1pxwa_PU_1-17
CI=0.43


[18-34]:
1pxwa_PU_18-34
CI=0.00


[35-62]:
1pxwa_PU_35-62
CI=0.52


[63-80]:
1pxwa_PU_63-80
CI=0.00


[81-107]:
1pxwa_PU_81-107
CI=2.08


[108-120]:
1pxwa_PU_108-120
CI=0.28


[121-128 ]:
1pxwa_PU_121-128
CI=0.00