Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-235]:
1pyma_PU0_1-235
CI=4.34


[236-284 ]:
1pyma_PU0_236-284
CI=0.31


Level 1
PU
Molecule needs Java 1.4 Structure


[1-235]:
1pyma_PU1_1-235
CI=4.34


[236-261]:
1pyma_PU1_236-261
CI=0.50


[262-284 ]:
1pyma_PU1_262-284
CI=0.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-104]:
1pyma_PU2_1-104
CI=3.61


[105-224]:
1pyma_PU2_105-224
CI=3.03


[225-235]:
1pyma_PU2_225-235
CI=0.00


[236-261]:
1pyma_PU2_236-261
CI=0.50


[262-284 ]:
1pyma_PU2_262-284
CI=0.08


Level 3
PU
Molecule needs Java 1.4 Structure


[1-104]:
1pyma_PU3_1-104
CI=3.61


[105-182]:
1pyma_PU3_105-182
CI=2.69


[183-224]:
1pyma_PU3_183-224
CI=1.53


[225-235]:
1pyma_PU3_225-235
CI=0.00


[236-261]:
1pyma_PU3_236-261
CI=0.50


[262-284 ]:
1pyma_PU3_262-284
CI=0.08


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1pyma_PU4_1-17
CI=0.10


[18-104]:
1pyma_PU4_18-104
CI=3.76


[105-182]:
1pyma_PU4_105-182
CI=2.69


[183-224]:
1pyma_PU4_183-224
CI=1.53


[225-235]:
1pyma_PU4_225-235
CI=0.00


[236-261]:
1pyma_PU4_236-261
CI=0.50


[262-284 ]:
1pyma_PU4_262-284
CI=0.08


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1pyma_PU5_1-17
CI=0.10


[18-41]:
1pyma_PU5_18-41
CI=2.34


[42-57]:
1pyma_PU5_42-57
CI=1.35


[58-104]:
1pyma_PU5_58-104
CI=2.27


[105-182]:
1pyma_PU5_105-182
CI=2.69


[183-224]:
1pyma_PU5_183-224
CI=1.53


[225-235]:
1pyma_PU5_225-235
CI=0.00


[236-261]:
1pyma_PU5_236-261
CI=0.50


[262-284 ]:
1pyma_PU5_262-284
CI=0.08


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1pyma_PU6_1-17
CI=0.10


[18-41]:
1pyma_PU6_18-41
CI=2.34


[42-57]:
1pyma_PU6_42-57
CI=1.35


[58-104]:
1pyma_PU6_58-104
CI=2.27


[105-132]:
1pyma_PU6_105-132
CI=0.94


[133-149]:
1pyma_PU6_133-149
CI=0.52


[150-182]:
1pyma_PU6_150-182
CI=2.24


[183-224]:
1pyma_PU6_183-224
CI=1.53


[225-235]:
1pyma_PU6_225-235
CI=0.00


[236-261]:
1pyma_PU6_236-261
CI=0.50


[262-284 ]:
1pyma_PU6_262-284
CI=0.08


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1pyma_PU7_1-17
CI=0.10


[18-41]:
1pyma_PU7_18-41
CI=2.34


[42-57]:
1pyma_PU7_42-57
CI=1.35


[58-104]:
1pyma_PU7_58-104
CI=2.27


[105-132]:
1pyma_PU7_105-132
CI=0.94


[133-149]:
1pyma_PU7_133-149
CI=0.52


[150-182]:
1pyma_PU7_150-182
CI=2.24


[183-201]:
1pyma_PU7_183-201
CI=0.20


[202-224]:
1pyma_PU7_202-224
CI=1.21


[225-235]:
1pyma_PU7_225-235
CI=0.00


[236-261]:
1pyma_PU7_236-261
CI=0.50


[262-284 ]:
1pyma_PU7_262-284
CI=0.08


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1pyma_PU_1-17
CI=0.10


[18-41]:
1pyma_PU_18-41
CI=2.34


[42-57]:
1pyma_PU_42-57
CI=1.35


[58-75]:
1pyma_PU_58-75
CI=0.30


[76-104]:
1pyma_PU_76-104
CI=1.43


[105-132]:
1pyma_PU_105-132
CI=0.94


[133-149]:
1pyma_PU_133-149
CI=0.52


[150-182]:
1pyma_PU_150-182
CI=2.24


[183-201]:
1pyma_PU_183-201
CI=0.20


[202-224]:
1pyma_PU_202-224
CI=1.21


[225-235]:
1pyma_PU_225-235
CI=0.00


[236-261]:
1pyma_PU_236-261
CI=0.50


[262-284 ]:
1pyma_PU_262-284
CI=0.08