Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-29]:
1pz4a_PU0_1-29
CI=0.06


[30-103]:
1pz4a_PU0_30-103
CI=4.09


[104-113 ]:
1pz4a_PU0_104-113
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1pz4a_PU1_1-29
CI=0.06


[30-63]:
1pz4a_PU1_30-63
CI=4.25


[64-103]:
1pz4a_PU1_64-103
CI=2.00


[104-113 ]:
1pz4a_PU1_104-113
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-29]:
1pz4a_PU_1-29
CI=0.06


[30-63]:
1pz4a_PU_30-63
CI=4.25


[64-82]:
1pz4a_PU_64-82
CI=0.10


[83-103]:
1pz4a_PU_83-103
CI=0.27


[104-113 ]:
1pz4a_PU_104-113
CI=0.00