Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-84]:
1pzga_PU0_1-84
CI=4.01


[85-327 ]:
1pzga_PU0_85-327
CI=3.84


Level 1
PU
Molecule needs Java 1.4 Structure


[1-84]:
1pzga_PU1_1-84
CI=4.01


[85-157]:
1pzga_PU1_85-157
CI=2.89


[158-227]:
1pzga_PU1_158-227
CI=2.82


[228-327 ]:
1pzga_PU1_228-327
CI=2.26


Level 2
PU
Molecule needs Java 1.4 Structure


[1-84]:
1pzga_PU2_1-84
CI=4.01


[85-157]:
1pzga_PU2_85-157
CI=2.89


[158-227]:
1pzga_PU2_158-227
CI=2.82


[228-297]:
1pzga_PU2_228-297
CI=3.13


[298-327 ]:
1pzga_PU2_298-327
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-84]:
1pzga_PU3_1-84
CI=4.01


[85-157]:
1pzga_PU3_85-157
CI=2.89


[158-227]:
1pzga_PU3_158-227
CI=2.82


[228-249]:
1pzga_PU3_228-249
CI=0.84


[250-297]:
1pzga_PU3_250-297
CI=4.15


[298-327 ]:
1pzga_PU3_298-327
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-84]:
1pzga_PU4_1-84
CI=4.01


[85-105]:
1pzga_PU4_85-105
CI=1.21


[106-157]:
1pzga_PU4_106-157
CI=2.90


[158-227]:
1pzga_PU4_158-227
CI=2.82


[228-249]:
1pzga_PU4_228-249
CI=0.84


[250-297]:
1pzga_PU4_250-297
CI=4.15


[298-327 ]:
1pzga_PU4_298-327
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-84]:
1pzga_PU5_1-84
CI=4.01


[85-105]:
1pzga_PU5_85-105
CI=1.21


[106-157]:
1pzga_PU5_106-157
CI=2.90


[158-179]:
1pzga_PU5_158-179
CI=1.44


[180-227]:
1pzga_PU5_180-227
CI=1.71


[228-249]:
1pzga_PU5_228-249
CI=0.84


[250-297]:
1pzga_PU5_250-297
CI=4.15


[298-327 ]:
1pzga_PU5_298-327
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-84]:
1pzga_PU6_1-84
CI=4.01


[85-105]:
1pzga_PU6_85-105
CI=1.21


[106-157]:
1pzga_PU6_106-157
CI=2.90


[158-179]:
1pzga_PU6_158-179
CI=1.44


[180-196]:
1pzga_PU6_180-196
CI=1.64


[197-227]:
1pzga_PU6_197-227
CI=0.24


[228-249]:
1pzga_PU6_228-249
CI=0.84


[250-297]:
1pzga_PU6_250-297
CI=4.15


[298-327 ]:
1pzga_PU6_298-327
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1pzga_PU7_1-22
CI=0.17


[23-68]:
1pzga_PU7_23-68
CI=3.36


[69-84]:
1pzga_PU7_69-84
CI=0.11


[85-105]:
1pzga_PU7_85-105
CI=1.21


[106-157]:
1pzga_PU7_106-157
CI=2.90


[158-179]:
1pzga_PU7_158-179
CI=1.44


[180-196]:
1pzga_PU7_180-196
CI=1.64


[197-227]:
1pzga_PU7_197-227
CI=0.24


[228-249]:
1pzga_PU7_228-249
CI=0.84


[250-297]:
1pzga_PU7_250-297
CI=4.15


[298-327 ]:
1pzga_PU7_298-327
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1pzga_PU8_1-22
CI=0.17


[23-68]:
1pzga_PU8_23-68
CI=3.36


[69-84]:
1pzga_PU8_69-84
CI=0.11


[85-105]:
1pzga_PU8_85-105
CI=1.21


[106-122]:
1pzga_PU8_106-122
CI=0.00


[123-157]:
1pzga_PU8_123-157
CI=2.06


[158-179]:
1pzga_PU8_158-179
CI=1.44


[180-196]:
1pzga_PU8_180-196
CI=1.64


[197-227]:
1pzga_PU8_197-227
CI=0.24


[228-249]:
1pzga_PU8_228-249
CI=0.84


[250-297]:
1pzga_PU8_250-297
CI=4.15


[298-327 ]:
1pzga_PU8_298-327
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-22]:
1pzga_PU_1-22
CI=0.17


[23-68]:
1pzga_PU_23-68
CI=3.36


[69-84]:
1pzga_PU_69-84
CI=0.11


[85-105]:
1pzga_PU_85-105
CI=1.21


[106-122]:
1pzga_PU_106-122
CI=0.00


[123-157]:
1pzga_PU_123-157
CI=2.06


[158-179]:
1pzga_PU_158-179
CI=1.44


[180-196]:
1pzga_PU_180-196
CI=1.64


[197-227]:
1pzga_PU_197-227
CI=0.24


[228-249]:
1pzga_PU_228-249
CI=0.84


[250-266]:
1pzga_PU_250-266
CI=0.64


[267-297]:
1pzga_PU_267-297
CI=2.56


[298-327 ]:
1pzga_PU_298-327
CI=0.00