Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-122]:
1pzta_PU0_1-122
CI=2.73


[123-246]:
1pzta_PU0_123-246
CI=3.23


[247-271 ]:
1pzta_PU0_247-271
CI=2.58


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pzta_PU1_1-16
CI=0.00


[17-33]:
1pzta_PU1_17-33
CI=0.00


[34-122]:
1pzta_PU1_34-122
CI=3.06


[123-246]:
1pzta_PU1_123-246
CI=3.23


[247-271 ]:
1pzta_PU1_247-271
CI=2.58


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pzta_PU2_1-16
CI=0.00


[17-33]:
1pzta_PU2_17-33
CI=0.00


[34-59]:
1pzta_PU2_34-59
CI=0.21


[60-79]:
1pzta_PU2_60-79
CI=0.00


[80-122]:
1pzta_PU2_80-122
CI=0.75


[123-246]:
1pzta_PU2_123-246
CI=3.23


[247-271 ]:
1pzta_PU2_247-271
CI=2.58


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pzta_PU3_1-16
CI=0.00


[17-33]:
1pzta_PU3_17-33
CI=0.00


[34-59]:
1pzta_PU3_34-59
CI=0.21


[60-79]:
1pzta_PU3_60-79
CI=0.00


[80-122]:
1pzta_PU3_80-122
CI=0.75


[123-214]:
1pzta_PU3_123-214
CI=3.38


[215-246]:
1pzta_PU3_215-246
CI=0.00


[247-271 ]:
1pzta_PU3_247-271
CI=2.58


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pzta_PU4_1-16
CI=0.00


[17-33]:
1pzta_PU4_17-33
CI=0.00


[34-59]:
1pzta_PU4_34-59
CI=0.21


[60-79]:
1pzta_PU4_60-79
CI=0.00


[80-122]:
1pzta_PU4_80-122
CI=0.75


[123-166]:
1pzta_PU4_123-166
CI=2.04


[167-200]:
1pzta_PU4_167-200
CI=0.83


[201-214]:
1pzta_PU4_201-214
CI=0.00


[215-246]:
1pzta_PU4_215-246
CI=0.00


[247-271 ]:
1pzta_PU4_247-271
CI=2.58


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pzta_PU5_1-16
CI=0.00


[17-33]:
1pzta_PU5_17-33
CI=0.00


[34-59]:
1pzta_PU5_34-59
CI=0.21


[60-79]:
1pzta_PU5_60-79
CI=0.00


[80-104]:
1pzta_PU5_80-104
CI=0.82


[105-122]:
1pzta_PU5_105-122
CI=0.31


[123-166]:
1pzta_PU5_123-166
CI=2.04


[167-200]:
1pzta_PU5_167-200
CI=0.83


[201-214]:
1pzta_PU5_201-214
CI=0.00


[215-246]:
1pzta_PU5_215-246
CI=0.00


[247-271 ]:
1pzta_PU5_247-271
CI=2.58


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pzta_PU6_1-16
CI=0.00


[17-33]:
1pzta_PU6_17-33
CI=0.00


[34-59]:
1pzta_PU6_34-59
CI=0.21


[60-79]:
1pzta_PU6_60-79
CI=0.00


[80-104]:
1pzta_PU6_80-104
CI=0.82


[105-122]:
1pzta_PU6_105-122
CI=0.31


[123-166]:
1pzta_PU6_123-166
CI=2.04


[167-183]:
1pzta_PU6_167-183
CI=0.11


[184-200]:
1pzta_PU6_184-200
CI=0.22


[201-214]:
1pzta_PU6_201-214
CI=0.00


[215-246]:
1pzta_PU6_215-246
CI=0.00


[247-271 ]:
1pzta_PU6_247-271
CI=2.58


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-16]:
1pzta_PU_1-16
CI=0.00


[17-33]:
1pzta_PU_17-33
CI=0.00


[34-59]:
1pzta_PU_34-59
CI=0.21


[60-79]:
1pzta_PU_60-79
CI=0.00


[80-104]:
1pzta_PU_80-104
CI=0.82


[105-122]:
1pzta_PU_105-122
CI=0.31


[123-140]:
1pzta_PU_123-140
CI=0.00


[141-166]:
1pzta_PU_141-166
CI=1.74


[167-183]:
1pzta_PU_167-183
CI=0.11


[184-200]:
1pzta_PU_184-200
CI=0.22


[201-214]:
1pzta_PU_201-214
CI=0.00


[215-246]:
1pzta_PU_215-246
CI=0.00


[247-271 ]:
1pzta_PU_247-271
CI=2.58