Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-155]:
1pzxa_PU0_1-155
CI=3.54


[156-277 ]:
1pzxa_PU0_156-277
CI=4.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1pzxa_PU1_1-27
CI=1.68


[28-61]:
1pzxa_PU1_28-61
CI=2.24


[62-155]:
1pzxa_PU1_62-155
CI=2.46


[156-277 ]:
1pzxa_PU1_156-277
CI=4.02


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1pzxa_PU2_1-27
CI=1.68


[28-61]:
1pzxa_PU2_28-61
CI=2.24


[62-120]:
1pzxa_PU2_62-120
CI=2.54


[121-155]:
1pzxa_PU2_121-155
CI=1.02


[156-277 ]:
1pzxa_PU2_156-277
CI=4.02


Level 3
PU
Molecule needs Java 1.4 Structure


[1-27]:
1pzxa_PU3_1-27
CI=1.68


[28-61]:
1pzxa_PU3_28-61
CI=2.24


[62-120]:
1pzxa_PU3_62-120
CI=2.54


[121-155]:
1pzxa_PU3_121-155
CI=1.02


[156-215]:
1pzxa_PU3_156-215
CI=2.82


[216-254]:
1pzxa_PU3_216-254
CI=2.48


[255-277 ]:
1pzxa_PU3_255-277
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-27]:
1pzxa_PU4_1-27
CI=1.68


[28-61]:
1pzxa_PU4_28-61
CI=2.24


[62-120]:
1pzxa_PU4_62-120
CI=2.54


[121-155]:
1pzxa_PU4_121-155
CI=1.02


[156-197]:
1pzxa_PU4_156-197
CI=3.28


[198-215]:
1pzxa_PU4_198-215
CI=0.00


[216-254]:
1pzxa_PU4_216-254
CI=2.48


[255-277 ]:
1pzxa_PU4_255-277
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-27]:
1pzxa_PU5_1-27
CI=1.68


[28-61]:
1pzxa_PU5_28-61
CI=2.24


[62-80]:
1pzxa_PU5_62-80
CI=0.10


[81-120]:
1pzxa_PU5_81-120
CI=2.58


[121-155]:
1pzxa_PU5_121-155
CI=1.02


[156-197]:
1pzxa_PU5_156-197
CI=3.28


[198-215]:
1pzxa_PU5_198-215
CI=0.00


[216-254]:
1pzxa_PU5_216-254
CI=2.48


[255-277 ]:
1pzxa_PU5_255-277
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-27]:
1pzxa_PU6_1-27
CI=1.68


[28-61]:
1pzxa_PU6_28-61
CI=2.24


[62-80]:
1pzxa_PU6_62-80
CI=0.10


[81-120]:
1pzxa_PU6_81-120
CI=2.58


[121-139]:
1pzxa_PU6_121-139
CI=0.00


[140-155]:
1pzxa_PU6_140-155
CI=0.00


[156-197]:
1pzxa_PU6_156-197
CI=3.28


[198-215]:
1pzxa_PU6_198-215
CI=0.00


[216-254]:
1pzxa_PU6_216-254
CI=2.48


[255-277 ]:
1pzxa_PU6_255-277
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-27]:
1pzxa_PU7_1-27
CI=1.68


[28-61]:
1pzxa_PU7_28-61
CI=2.24


[62-80]:
1pzxa_PU7_62-80
CI=0.10


[81-120]:
1pzxa_PU7_81-120
CI=2.58


[121-139]:
1pzxa_PU7_121-139
CI=0.00


[140-155]:
1pzxa_PU7_140-155
CI=0.00


[156-176]:
1pzxa_PU7_156-176
CI=0.26


[177-197]:
1pzxa_PU7_177-197
CI=3.05


[198-215]:
1pzxa_PU7_198-215
CI=0.00


[216-254]:
1pzxa_PU7_216-254
CI=2.48


[255-277 ]:
1pzxa_PU7_255-277
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-27]:
1pzxa_PU8_1-27
CI=1.68


[28-61]:
1pzxa_PU8_28-61
CI=2.24


[62-80]:
1pzxa_PU8_62-80
CI=0.10


[81-98]:
1pzxa_PU8_81-98
CI=0.72


[99-120]:
1pzxa_PU8_99-120
CI=0.59


[121-139]:
1pzxa_PU8_121-139
CI=0.00


[140-155]:
1pzxa_PU8_140-155
CI=0.00


[156-176]:
1pzxa_PU8_156-176
CI=0.26


[177-197]:
1pzxa_PU8_177-197
CI=3.05


[198-215]:
1pzxa_PU8_198-215
CI=0.00


[216-254]:
1pzxa_PU8_216-254
CI=2.48


[255-277 ]:
1pzxa_PU8_255-277
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-27]:
1pzxa_PU_1-27
CI=1.68


[28-61]:
1pzxa_PU_28-61
CI=2.24


[62-80]:
1pzxa_PU_62-80
CI=0.10


[81-98]:
1pzxa_PU_81-98
CI=0.72


[99-120]:
1pzxa_PU_99-120
CI=0.59


[121-139]:
1pzxa_PU_121-139
CI=0.00


[140-155]:
1pzxa_PU_140-155
CI=0.00


[156-176]:
1pzxa_PU_156-176
CI=0.26


[177-197]:
1pzxa_PU_177-197
CI=3.05


[198-215]:
1pzxa_PU_198-215
CI=0.00


[216-235]:
1pzxa_PU_216-235
CI=0.36


[236-254]:
1pzxa_PU_236-254
CI=0.29


[255-277 ]:
1pzxa_PU_255-277
CI=0.00