Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-51]:
1q08a_PU0_1-51
CI=0.92


[52-94 ]:
1q08a_PU0_52-94
CI=1.24


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1q08a_PU1_1-17
CI=0.00


[18-51]:
1q08a_PU1_18-51
CI=0.60


[52-94 ]:
1q08a_PU1_52-94
CI=1.24


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1q08a_PU2_1-17
CI=0.00


[18-35]:
1q08a_PU2_18-35
CI=0.30


[36-51]:
1q08a_PU2_36-51
CI=0.00


[52-94 ]:
1q08a_PU2_52-94
CI=1.24


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1q08a_PU_1-17
CI=0.00


[18-35]:
1q08a_PU_18-35
CI=0.30


[36-51]:
1q08a_PU_36-51
CI=0.00


[52-70]:
1q08a_PU_52-70
CI=0.00


[71-94 ]:
1q08a_PU_71-94
CI=0.78